Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 PKIA-AS1-202ENST00000522302 2011 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 PMFBP1-202ENST00000355636 3501 ntAPPRIS ALT2 TSL 5 BASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 CASC19-228ENST00000641414 1684 ntBASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 ZNF711-202ENST00000360700 4844 ntAPPRIS ALT2 TSL 1 (best) BASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 AC243772.3-201ENST00000617878 1537 ntTSL 5 BASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 DLG2-230ENST00000532653 2891 ntAPPRIS ALT2 TSL 1 (best) BASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 AC007114.2-201ENST00000576014 4281 ntBASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 ZNF532-214ENST00000589288 5585 ntAPPRIS P1 TSL 5 BASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 HBS1L-206ENST00000415177 2636 ntTSL 5 BASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 LALBA-201ENST00000301046 728 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 FASLG-201ENST00000340030 917 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 RNA5SP429-201ENST00000363688 109 ntBASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 RN7SKP91-201ENST00000410852 288 ntBASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 RNU6-516P-201ENST00000411381 104 ntBASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 AC007879.3-201ENST00000417096 556 ntTSL 4 BASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 AL031681.1-201ENST00000443304 400 ntBASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 ZNF525-204ENST00000491101 569 ntTSL 4 BASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 AC113155.1-201ENST00000511141 769 ntBASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 RNU4-57P-201ENST00000515980 135 ntBASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 AC023813.1-201ENST00000565055 306 ntTSL 5 BASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 AP003115.1-201ENST00000569849 463 ntBASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 OR1M4P-201ENST00000589199 287 ntBASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 AC007566.2-201ENST00000603642 413 ntBASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 AC098826.3-201ENST00000603823 466 ntBASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 AL670379.2-201ENST00000604983 252 ntBASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 AL078624.2-201ENST00000605063 554 ntBASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 AC037487.3-201ENST00000606668 112 ntBASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 MIR6774-201ENST00000614651 70 ntBASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 FGD6-205ENST00000549499 3757 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 LINC01579-207ENST00000557481 3480 ntTSL 5 BASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 ZNF329-204ENST00000598312 3410 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 VIRMA-202ENST00000421249 3924 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 CDC27P2-201ENST00000425026 1922 ntBASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 SRBD1-201ENST00000263736 3681 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
VPS9D1Q9Y2B5 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 NXF2B-205ENST00000618881 3193 ntTSL 2 BASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 CTNNA1P1-201ENST00000515849 2728 ntBASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 TEK-202ENST00000406359 3935 ntTSL 2 BASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 RNA5SP321-201ENST00000362722 111 ntBASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 U8.8-201ENST00000365399 135 ntBASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 AP000812.1-201ENST00000378140 477 ntTSL 3 BASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 RPL21P75-201ENST00000396599 483 ntBASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 RPL21P28-201ENST00000401418 483 ntBASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 RPL12P23-201ENST00000405880 490 ntBASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 ZNF37CP-201ENST00000406795 241 ntBASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 AL929472.1-201ENST00000417484 429 ntBASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 AL590556.1-201ENST00000423231 483 ntBASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 AC000089.1-201ENST00000424559 801 ntBASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 AHCYP8-201ENST00000425108 209 ntBASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 AL845321.1-201ENST00000444603 348 ntBASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 AL356133.1-201ENST00000444762 372 ntBASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 AC104073.1-201ENST00000451988 151 ntBASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 RPL21P11-201ENST00000461458 483 ntBASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 RPL21P39-201ENST00000463605 483 ntBASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 AC132942.1-201ENST00000486753 483 ntBASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 AC093591.1-201ENST00000491435 481 ntBASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 RPL21P16-201ENST00000495531 483 ntBASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 AC093878.1-201ENST00000515630 432 ntBASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 RN7SKP70-201ENST00000516655 271 ntBASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 AP001831.1-201ENST00000524610 411 ntTSL 3 BASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 AF235103.1-201ENST00000530223 439 ntTSL 3 BASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 AC004381.1-201ENST00000565498 351 ntTSL 5 BASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 MIR4312-201ENST00000579909 76 ntBASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 AC098847.2-201ENST00000588088 528 ntTSL 5 BASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 AC091133.5-201ENST00000603088 301 ntBASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 MMP2-AS1-203ENST00000620495 625 ntTSL 3 BASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 BNC1-202ENST00000569704 3169 ntAPPRIS ALT2 TSL 5 BASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 CACNB2-215ENST00000615785 3707 ntTSL 5 BASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
VPS9D1Q9Y2B5 NEK5-201ENST00000355568 2918 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 149.8 ms