Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC4.9□□□□□ -1.63
USP39Q53GS9 MIR3662-201ENST00000637030 95 ntBASIC4.9□□□□□ -1.63
USP39Q53GS9 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC4.9□□□□□ -1.63
USP39Q53GS9 AC108751.5-201ENST00000492880 1336 ntBASIC4.9□□□□□ -1.63
USP39Q53GS9 AC107982.1-201ENST00000507171 1300 ntBASIC4.9□□□□□ -1.63
USP39Q53GS9 AC139713.2-214ENST00000642059 1811 ntBASIC4.9□□□□□ -1.63
USP39Q53GS9 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
USP39Q53GS9 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.9□□□□□ -1.63
USP39Q53GS9 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC4.9□□□□□ -1.63
USP39Q53GS9 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
USP39Q53GS9 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
USP39Q53GS9 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.9□□□□□ -1.63
USP39Q53GS9 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
USP39Q53GS9 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
USP39Q53GS9 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC4.89□□□□□ -1.63
USP39Q53GS9 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
USP39Q53GS9 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
USP39Q53GS9 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
USP39Q53GS9 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
USP39Q53GS9 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
USP39Q53GS9 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
USP39Q53GS9 AC011155.1-201ENST00000316512 456 ntBASIC4.89□□□□□ -1.63
USP39Q53GS9 Y_RNA.142-201ENST00000363491 102 ntBASIC4.89□□□□□ -1.63
USP39Q53GS9 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC4.89□□□□□ -1.63
USP39Q53GS9 Y_RNA.409-201ENST00000383990 98 ntBASIC4.89□□□□□ -1.63
USP39Q53GS9 RNU6-483P-201ENST00000384088 108 ntBASIC4.89□□□□□ -1.63
USP39Q53GS9 AC025750.1-201ENST00000399891 379 ntBASIC4.89□□□□□ -1.63
USP39Q53GS9 RPS24P12-201ENST00000402084 394 ntBASIC4.89□□□□□ -1.63
USP39Q53GS9 AL049697.2-201ENST00000403708 294 ntBASIC4.89□□□□□ -1.63
USP39Q53GS9 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC4.89□□□□□ -1.63
USP39Q53GS9 RPL17P36-201ENST00000420302 549 ntBASIC4.89□□□□□ -1.63
USP39Q53GS9 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
USP39Q53GS9 RSL24D1P6-201ENST00000426934 401 ntBASIC4.89□□□□□ -1.63
USP39Q53GS9 RPL23AP1-201ENST00000428990 471 ntBASIC4.89□□□□□ -1.63
USP39Q53GS9 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC4.89□□□□□ -1.63
USP39Q53GS9 AL358934.1-201ENST00000432346 324 ntBASIC4.89□□□□□ -1.63
USP39Q53GS9 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC4.89□□□□□ -1.63
USP39Q53GS9 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC4.89□□□□□ -1.63
USP39Q53GS9 TXNP5-201ENST00000441043 315 ntBASIC4.89□□□□□ -1.63
USP39Q53GS9 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC4.89□□□□□ -1.63
USP39Q53GS9 GAPDHP17-201ENST00000449858 1001 ntBASIC4.89□□□□□ -1.63
USP39Q53GS9 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
USP39Q53GS9 CEACAMP6-201ENST00000452007 574 ntBASIC4.89□□□□□ -1.63
USP39Q53GS9 BX248409.1-201ENST00000455497 255 ntBASIC4.89□□□□□ -1.63
USP39Q53GS9 AC091564.1-201ENST00000464563 479 ntBASIC4.89□□□□□ -1.63
USP39Q53GS9 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC4.89□□□□□ -1.63
USP39Q53GS9 AC073073.1-201ENST00000493920 463 ntBASIC4.89□□□□□ -1.63
USP39Q53GS9 AC114981.1-201ENST00000503897 678 ntBASIC4.89□□□□□ -1.63
USP39Q53GS9 AC021678.1-201ENST00000505195 936 ntBASIC4.89□□□□□ -1.63
USP39Q53GS9 FGF7P4-201ENST00000509595 295 ntBASIC4.89□□□□□ -1.63
USP39Q53GS9 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC4.89□□□□□ -1.63
USP39Q53GS9 AF131216.2-201ENST00000512316 564 ntBASIC4.89□□□□□ -1.63
USP39Q53GS9 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC4.89□□□□□ -1.63
USP39Q53GS9 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC4.89□□□□□ -1.63
USP39Q53GS9 RN7SKP122-201ENST00000515923 296 ntBASIC4.89□□□□□ -1.63
USP39Q53GS9 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC4.89□□□□□ -1.63
USP39Q53GS9 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC4.89□□□□□ -1.63
USP39Q53GS9 HPRT1P3-201ENST00000539521 576 ntBASIC4.89□□□□□ -1.63
USP39Q53GS9 CBX3P5-201ENST00000552017 521 ntBASIC4.89□□□□□ -1.63
USP39Q53GS9 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC4.89□□□□□ -1.63
USP39Q53GS9 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC4.89□□□□□ -1.63
USP39Q53GS9 AC090312.1-201ENST00000580637 348 ntBASIC4.89□□□□□ -1.63
USP39Q53GS9 AC093838.1-201ENST00000613014 469 ntBASIC4.89□□□□□ -1.63
USP39Q53GS9 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC4.89□□□□□ -1.63
USP39Q53GS9 AC243756.2-201ENST00000618406 463 ntBASIC4.89□□□□□ -1.63
USP39Q53GS9 AC090574.1-201ENST00000623186 233 ntBASIC4.89□□□□□ -1.63
USP39Q53GS9 AC093591.3-201ENST00000634516 308 ntBASIC4.89□□□□□ -1.63
USP39Q53GS9 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
USP39Q53GS9 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
USP39Q53GS9 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
USP39Q53GS9 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
USP39Q53GS9 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
USP39Q53GS9 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
USP39Q53GS9 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC4.89□□□□□ -1.63
USP39Q53GS9 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC4.88□□□□□ -1.63
USP39Q53GS9 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.88□□□□□ -1.63
USP39Q53GS9 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
USP39Q53GS9 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
USP39Q53GS9 RNU4-79P-201ENST00000362764 141 ntBASIC4.88□□□□□ -1.63
USP39Q53GS9 SNORD113.2-201ENST00000364166 89 ntBASIC4.88□□□□□ -1.63
USP39Q53GS9 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
USP39Q53GS9 RNU6-877P-201ENST00000383868 107 ntBASIC4.88□□□□□ -1.63
USP39Q53GS9 U3.22-201ENST00000391120 215 ntBASIC4.88□□□□□ -1.63
USP39Q53GS9 RSU1P3-201ENST00000412878 835 ntBASIC4.88□□□□□ -1.63
USP39Q53GS9 HMGB3P20-201ENST00000417997 600 ntBASIC4.88□□□□□ -1.63
USP39Q53GS9 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC4.88□□□□□ -1.63
USP39Q53GS9 DPY19L1P2-201ENST00000426647 915 ntBASIC4.88□□□□□ -1.63
USP39Q53GS9 BX890604.2-201ENST00000427883 474 ntBASIC4.88□□□□□ -1.63
USP39Q53GS9 AC005534.2-201ENST00000431047 433 ntBASIC4.88□□□□□ -1.63
USP39Q53GS9 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC4.88□□□□□ -1.63
USP39Q53GS9 RPL37P21-201ENST00000435890 276 ntBASIC4.88□□□□□ -1.63
USP39Q53GS9 MTCYBP6-201ENST00000441810 138 ntBASIC4.88□□□□□ -1.63
USP39Q53GS9 AL162591.2-201ENST00000449634 317 ntBASIC4.88□□□□□ -1.63
USP39Q53GS9 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC4.88□□□□□ -1.63
USP39Q53GS9 AL356981.1-201ENST00000454879 684 ntBASIC4.88□□□□□ -1.63
USP39Q53GS9 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.88□□□□□ -1.63
USP39Q53GS9 AC010307.1-201ENST00000467206 836 ntBASIC4.88□□□□□ -1.63
USP39Q53GS9 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC4.88□□□□□ -1.63
USP39Q53GS9 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC4.88□□□□□ -1.63
USP39Q53GS9 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms