Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 MTND2P8-201ENST00000450555 1025 ntBASIC2.63□□□□□ -1.99
FOXF1Q12946 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC2.63□□□□□ -1.99
FOXF1Q12946 RPL21P103-201ENST00000479921 488 ntBASIC2.63□□□□□ -1.99
FOXF1Q12946 RPL7P23-201ENST00000493874 747 ntBASIC2.63□□□□□ -1.99
FOXF1Q12946 RPL30P11-201ENST00000495304 339 ntBASIC2.63□□□□□ -1.99
FOXF1Q12946 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC2.63□□□□□ -1.99
FOXF1Q12946 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC2.63□□□□□ -1.99
FOXF1Q12946 RNA5SP76-201ENST00000516277 87 ntBASIC2.63□□□□□ -1.99
FOXF1Q12946 RNU6-551P-201ENST00000516661 103 ntBASIC2.63□□□□□ -1.99
FOXF1Q12946 FAM60DP-201ENST00000524174 632 ntBASIC2.63□□□□□ -1.99
FOXF1Q12946 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC2.63□□□□□ -1.99
FOXF1Q12946 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC2.63□□□□□ -1.99
FOXF1Q12946 MAGOH2P-202ENST00000584384 429 ntBASIC2.63□□□□□ -1.99
FOXF1Q12946 AP003117.2-201ENST00000606010 545 ntBASIC2.63□□□□□ -1.99
FOXF1Q12946 AC105429.2-201ENST00000610567 517 ntBASIC2.63□□□□□ -1.99
FOXF1Q12946 CYCSP41-201ENST00000616920 296 ntBASIC2.63□□□□□ -1.99
FOXF1Q12946 AC015726.3-201ENST00000624501 418 ntBASIC2.63□□□□□ -1.99
FOXF1Q12946 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
FOXF1Q12946 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
FOXF1Q12946 ZNF33CP-201ENST00000432492 2030 ntBASIC2.63□□□□□ -1.99
FOXF1Q12946 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.62□□□□□ -1.99
FOXF1Q12946 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
FOXF1Q12946 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.62□□□□□ -1.99
FOXF1Q12946 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC2.62□□□□□ -1.99
FOXF1Q12946 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC2.62□□□□□ -1.99
FOXF1Q12946 SNORA44-201ENST00000384584 132 ntBASIC2.62□□□□□ -1.99
FOXF1Q12946 MIR483-201ENST00000385070 76 ntBASIC2.62□□□□□ -1.99
FOXF1Q12946 AC004022.2-201ENST00000413824 193 ntBASIC2.62□□□□□ -1.99
FOXF1Q12946 EEF1A1P41-201ENST00000414667 207 ntBASIC2.62□□□□□ -1.99
FOXF1Q12946 ZNF92P1Y-201ENST00000415010 1191 ntBASIC2.62□□□□□ -1.99
FOXF1Q12946 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC2.62□□□□□ -1.99
FOXF1Q12946 RBM6-203ENST00000421682 684 ntTSL 2 BASIC2.62□□□□□ -1.99
FOXF1Q12946 AL390023.1-201ENST00000428836 262 ntBASIC2.62□□□□□ -1.99
FOXF1Q12946 AL139132.1-201ENST00000431587 344 ntBASIC2.62□□□□□ -1.99
FOXF1Q12946 NEK4P1-201ENST00000433383 879 ntBASIC2.62□□□□□ -1.99
FOXF1Q12946 MED6P1-201ENST00000439659 713 ntBASIC2.62□□□□□ -1.99
FOXF1Q12946 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.62□□□□□ -1.99
FOXF1Q12946 IGKV1OR-3-201ENST00000446944 348 ntBASIC2.62□□□□□ -1.99
FOXF1Q12946 RPL36AP33-201ENST00000450395 310 ntBASIC2.62□□□□□ -1.99
FOXF1Q12946 S100A11P2-201ENST00000467589 312 ntBASIC2.62□□□□□ -1.99
FOXF1Q12946 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC2.62□□□□□ -1.99
FOXF1Q12946 AP004217.1-201ENST00000480579 346 ntBASIC2.62□□□□□ -1.99
FOXF1Q12946 RPS4XP13-201ENST00000483219 789 ntBASIC2.62□□□□□ -1.99
FOXF1Q12946 AC080014.1-201ENST00000496877 1201 ntBASIC2.62□□□□□ -1.99
FOXF1Q12946 AC083906.5-201ENST00000503722 328 ntBASIC2.62□□□□□ -1.99
FOXF1Q12946 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC2.62□□□□□ -1.99
FOXF1Q12946 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC2.62□□□□□ -1.99
FOXF1Q12946 CR383656.14-201ENST00000551951 406 ntBASIC2.62□□□□□ -1.99
FOXF1Q12946 AL049870.4-201ENST00000555741 486 ntBASIC2.62□□□□□ -1.99
FOXF1Q12946 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC2.62□□□□□ -1.99
FOXF1Q12946 AC034105.3-201ENST00000565294 442 ntBASIC2.62□□□□□ -1.99
FOXF1Q12946 AC055876.1-202ENST00000567053 138 ntBASIC2.62□□□□□ -1.99
FOXF1Q12946 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC2.62□□□□□ -1.99
FOXF1Q12946 AC078899.3-201ENST00000599065 212 ntBASIC2.62□□□□□ -1.99
FOXF1Q12946 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.62□□□□□ -1.99
FOXF1Q12946 RNA5SP108-201ENST00000605921 117 ntBASIC2.62□□□□□ -1.99
FOXF1Q12946 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC2.62□□□□□ -1.99
FOXF1Q12946 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC2.62□□□□□ -1.99
FOXF1Q12946 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC2.62□□□□□ -1.99
FOXF1Q12946 AC016911.1-201ENST00000613297 452 ntBASIC2.62□□□□□ -1.99
FOXF1Q12946 AL590240.3-201ENST00000621416 943 ntBASIC2.62□□□□□ -1.99
FOXF1Q12946 PLCE1P1-201ENST00000622094 305 ntBASIC2.62□□□□□ -1.99
FOXF1Q12946 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.62□□□□□ -1.99
FOXF1Q12946 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC2.62□□□□□ -1.99
FOXF1Q12946 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
FOXF1Q12946 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.62□□□□□ -1.99
FOXF1Q12946 AC009487.2-201ENST00000420969 6821 ntBASIC2.61□□□□□ -1.99
FOXF1Q12946 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
FOXF1Q12946 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
FOXF1Q12946 RNA5SP295-201ENST00000362655 121 ntBASIC2.61□□□□□ -1.99
FOXF1Q12946 RNU6-152P-201ENST00000384037 107 ntBASIC2.61□□□□□ -1.99
FOXF1Q12946 RNU6-244P-201ENST00000391028 104 ntBASIC2.61□□□□□ -1.99
FOXF1Q12946 CCNB2P1-201ENST00000399411 1150 ntBASIC2.61□□□□□ -1.99
FOXF1Q12946 HIST1H2APS3-201ENST00000403259 134 ntBASIC2.61□□□□□ -1.99
FOXF1Q12946 AC105402.1-201ENST00000413336 545 ntBASIC2.61□□□□□ -1.99
FOXF1Q12946 RNF19BPX-201ENST00000426224 625 ntBASIC2.61□□□□□ -1.99
FOXF1Q12946 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.61□□□□□ -1.99
FOXF1Q12946 DPPA2P1-201ENST00000428060 556 ntBASIC2.61□□□□□ -1.99
FOXF1Q12946 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.61□□□□□ -1.99
FOXF1Q12946 NIPA2P5-201ENST00000452282 464 ntBASIC2.61□□□□□ -1.99
FOXF1Q12946 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC2.61□□□□□ -1.99
FOXF1Q12946 SETP6-201ENST00000479329 568 ntBASIC2.61□□□□□ -1.99
FOXF1Q12946 AC078817.1-201ENST00000492623 435 ntBASIC2.61□□□□□ -1.99
FOXF1Q12946 RPL5P23-201ENST00000496040 868 ntBASIC2.61□□□□□ -1.99
FOXF1Q12946 AC021087.2-201ENST00000504656 1203 ntBASIC2.61□□□□□ -1.99
FOXF1Q12946 AC108157.1-201ENST00000510511 539 ntBASIC2.61□□□□□ -1.99
FOXF1Q12946 FABP5P6-201ENST00000510588 409 ntBASIC2.61□□□□□ -1.99
FOXF1Q12946 AC093770.1-201ENST00000511559 571 ntBASIC2.61□□□□□ -1.99
FOXF1Q12946 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC2.61□□□□□ -1.99
FOXF1Q12946 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC2.61□□□□□ -1.99
FOXF1Q12946 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC2.61□□□□□ -1.99
FOXF1Q12946 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC2.61□□□□□ -1.99
FOXF1Q12946 MIR548Y-201ENST00000582739 110 ntBASIC2.61□□□□□ -1.99
FOXF1Q12946 AL451007.1-201ENST00000595491 289 ntBASIC2.61□□□□□ -1.99
FOXF1Q12946 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC2.61□□□□□ -1.99
FOXF1Q12946 AC005000.2-201ENST00000605468 310 ntBASIC2.61□□□□□ -1.99
FOXF1Q12946 AC090525.3-201ENST00000605601 189 ntBASIC2.61□□□□□ -1.99
FOXF1Q12946 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC2.61□□□□□ -1.99
FOXF1Q12946 AC093732.2-201ENST00000607950 274 ntBASIC2.61□□□□□ -1.99
FOXF1Q12946 AC069234.5-201ENST00000611056 416 ntBASIC2.61□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms