Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC3.48□□□□□ -1.85
CDX1P47902 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC3.48□□□□□ -1.85
CDX1P47902 HMGB1P22-201ENST00000505315 124 ntBASIC3.48□□□□□ -1.85
CDX1P47902 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC3.48□□□□□ -1.85
CDX1P47902 AC025554.1-201ENST00000505641 188 ntBASIC3.48□□□□□ -1.85
CDX1P47902 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC3.48□□□□□ -1.85
CDX1P47902 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC3.48□□□□□ -1.85
CDX1P47902 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC3.48□□□□□ -1.85
CDX1P47902 RN7SKP287-201ENST00000516546 266 ntBASIC3.48□□□□□ -1.85
CDX1P47902 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.48□□□□□ -1.85
CDX1P47902 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC3.48□□□□□ -1.85
CDX1P47902 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC3.48□□□□□ -1.85
CDX1P47902 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC3.48□□□□□ -1.85
CDX1P47902 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC3.48□□□□□ -1.85
CDX1P47902 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC3.48□□□□□ -1.85
CDX1P47902 AC087481.2-201ENST00000565492 330 ntBASIC3.48□□□□□ -1.85
CDX1P47902 AL354943.1-201ENST00000572103 781 ntBASIC3.48□□□□□ -1.85
CDX1P47902 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC3.48□□□□□ -1.85
CDX1P47902 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC3.48□□□□□ -1.85
CDX1P47902 AC006338.2-201ENST00000616864 791 ntBASIC3.48□□□□□ -1.85
CDX1P47902 AC091905.2-201ENST00000623143 306 ntBASIC3.48□□□□□ -1.85
CDX1P47902 AC048347.1-201ENST00000624621 427 ntBASIC3.48□□□□□ -1.85
CDX1P47902 CRYM-AS1-204ENST00000637983 556 ntBASIC3.48□□□□□ -1.85
CDX1P47902 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
CDX1P47902 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
CDX1P47902 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.48□□□□□ -1.85
CDX1P47902 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
CDX1P47902 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
CDX1P47902 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
CDX1P47902 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.47□□□□□ -1.85
CDX1P47902 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.47□□□□□ -1.85
CDX1P47902 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC3.47□□□□□ -1.85
CDX1P47902 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
CDX1P47902 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC3.47□□□□□ -1.85
CDX1P47902 OR5P1P-201ENST00000299512 925 ntBASIC3.47□□□□□ -1.85
CDX1P47902 RNA5SP509-201ENST00000364577 119 ntBASIC3.47□□□□□ -1.85
CDX1P47902 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.47□□□□□ -1.85
CDX1P47902 SNORD3H-201ENST00000384486 214 ntBASIC3.47□□□□□ -1.85
CDX1P47902 MIR3065-201ENST00000390137 79 ntBASIC3.47□□□□□ -1.85
CDX1P47902 RNU6-952P-201ENST00000391164 108 ntBASIC3.47□□□□□ -1.85
CDX1P47902 TPT1P2-201ENST00000413105 503 ntBASIC3.47□□□□□ -1.85
CDX1P47902 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC3.47□□□□□ -1.85
CDX1P47902 TRBV24OR9-2-201ENST00000416632 435 ntBASIC3.47□□□□□ -1.85
CDX1P47902 RPL7P30-201ENST00000420888 709 ntBASIC3.47□□□□□ -1.85
CDX1P47902 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC3.47□□□□□ -1.85
CDX1P47902 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.47□□□□□ -1.85
CDX1P47902 AC017083.1-201ENST00000428093 483 ntBASIC3.47□□□□□ -1.85
CDX1P47902 HIGD1AP4-201ENST00000430194 280 ntBASIC3.47□□□□□ -1.85
CDX1P47902 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC3.47□□□□□ -1.85
CDX1P47902 MTCYBP31-201ENST00000438855 1122 ntBASIC3.47□□□□□ -1.85
CDX1P47902 SDCBPP1-201ENST00000440192 890 ntBASIC3.47□□□□□ -1.85
CDX1P47902 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
CDX1P47902 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.47□□□□□ -1.85
CDX1P47902 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC3.47□□□□□ -1.85
CDX1P47902 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC3.47□□□□□ -1.85
CDX1P47902 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC3.47□□□□□ -1.85
CDX1P47902 RPS24P6-201ENST00000452670 400 ntBASIC3.47□□□□□ -1.85
CDX1P47902 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC3.47□□□□□ -1.85
CDX1P47902 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC3.47□□□□□ -1.85
CDX1P47902 MEMO1P3-201ENST00000459811 302 ntBASIC3.47□□□□□ -1.85
CDX1P47902 RN7SL385P-201ENST00000468873 276 ntBASIC3.47□□□□□ -1.85
CDX1P47902 AC011276.1-201ENST00000469688 323 ntBASIC3.47□□□□□ -1.85
CDX1P47902 RPL7L1P8-201ENST00000469911 741 ntBASIC3.47□□□□□ -1.85
CDX1P47902 AC104164.2-201ENST00000496953 495 ntBASIC3.47□□□□□ -1.85
CDX1P47902 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC3.47□□□□□ -1.85
CDX1P47902 RN7SKP244-201ENST00000516513 307 ntBASIC3.47□□□□□ -1.85
CDX1P47902 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC3.47□□□□□ -1.85
CDX1P47902 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC3.47□□□□□ -1.85
CDX1P47902 AC068831.4-201ENST00000556118 109 ntBASIC3.47□□□□□ -1.85
CDX1P47902 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC3.47□□□□□ -1.85
CDX1P47902 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC3.47□□□□□ -1.85
CDX1P47902 BBIP1P1-201ENST00000602999 279 ntBASIC3.47□□□□□ -1.85
CDX1P47902 AP002360.3-201ENST00000607673 710 ntBASIC3.47□□□□□ -1.85
CDX1P47902 AC079395.3-201ENST00000615161 484 ntBASIC3.47□□□□□ -1.85
CDX1P47902 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.47□□□□□ -1.85
CDX1P47902 AL356863.1-201ENST00000623378 1080 ntBASIC3.47□□□□□ -1.85
CDX1P47902 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC3.47□□□□□ -1.85
CDX1P47902 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC3.47□□□□□ -1.85
CDX1P47902 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.47□□□□□ -1.85
CDX1P47902 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
CDX1P47902 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC3.47□□□□□ -1.85
CDX1P47902 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
CDX1P47902 GABPAP-201ENST00000419271 1356 ntBASIC3.47□□□□□ -1.85
CDX1P47902 LINC00561-201ENST00000565815 2738 ntBASIC3.47□□□□□ -1.85
CDX1P47902 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC3.47□□□□□ -1.85
CDX1P47902 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.46□□□□□ -1.85
CDX1P47902 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.46□□□□□ -1.85
CDX1P47902 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC3.46□□□□□ -1.85
CDX1P47902 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.46□□□□□ -1.85
CDX1P47902 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.46□□□□□ -1.86
CDX1P47902 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.46□□□□□ -1.86
CDX1P47902 OR4G11P-202ENST00000642116 1414 ntBASIC3.46□□□□□ -1.86
CDX1P47902 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
CDX1P47902 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.46□□□□□ -1.86
CDX1P47902 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
CDX1P47902 SNORA4.1-201ENST00000364263 144 ntBASIC3.46□□□□□ -1.86
CDX1P47902 RNU6-1074P-201ENST00000383995 104 ntBASIC3.46□□□□□ -1.86
CDX1P47902 RNU2-47P-201ENST00000410649 186 ntBASIC3.46□□□□□ -1.86
CDX1P47902 RNU2-37P-201ENST00000410695 177 ntBASIC3.46□□□□□ -1.86
CDX1P47902 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms