Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC2.98□□□□□ -1.93
USF1P22415 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC2.98□□□□□ -1.93
USF1P22415 AL671309.1-201ENST00000603750 544 ntBASIC2.98□□□□□ -1.93
USF1P22415 AC006077.1-201ENST00000604746 343 ntBASIC2.98□□□□□ -1.93
USF1P22415 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
USF1P22415 AC090425.2-201ENST00000608818 501 ntBASIC2.98□□□□□ -1.93
USF1P22415 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC2.98□□□□□ -1.93
USF1P22415 PLCE1P1-201ENST00000622094 305 ntBASIC2.98□□□□□ -1.93
USF1P22415 AL732618.1-201ENST00000623251 301 ntBASIC2.98□□□□□ -1.93
USF1P22415 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC2.98□□□□□ -1.93
USF1P22415 AL732372.2-225ENST00000642124 456 ntBASIC2.98□□□□□ -1.93
USF1P22415 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
USF1P22415 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
USF1P22415 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
USF1P22415 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
USF1P22415 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
USF1P22415 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC2.97□□□□□ -1.93
USF1P22415 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
USF1P22415 AL355578.1-201ENST00000607405 1328 ntBASIC2.97□□□□□ -1.93
USF1P22415 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC2.97□□□□□ -1.93
USF1P22415 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC2.97□□□□□ -1.93
USF1P22415 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC2.97□□□□□ -1.93
USF1P22415 RNU6ATAC10P-201ENST00000408635 111 ntBASIC2.97□□□□□ -1.93
USF1P22415 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC2.97□□□□□ -1.93
USF1P22415 UBE2V1P9-201ENST00000414760 368 ntBASIC2.97□□□□□ -1.93
USF1P22415 AL158050.1-201ENST00000416077 457 ntBASIC2.97□□□□□ -1.93
USF1P22415 AL357078.2-201ENST00000416486 427 ntBASIC2.97□□□□□ -1.93
USF1P22415 RPS15AP6-201ENST00000420703 385 ntBASIC2.97□□□□□ -1.93
USF1P22415 OFD1P18Y-201ENST00000420889 959 ntBASIC2.97□□□□□ -1.93
USF1P22415 AL645931.1-201ENST00000439737 410 ntBASIC2.97□□□□□ -1.93
USF1P22415 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC2.97□□□□□ -1.93
USF1P22415 RPS29P31-201ENST00000446147 164 ntBASIC2.97□□□□□ -1.93
USF1P22415 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC2.97□□□□□ -1.93
USF1P22415 RPL26P28-201ENST00000451325 435 ntBASIC2.97□□□□□ -1.93
USF1P22415 AC092754.2-201ENST00000463506 460 ntBASIC2.97□□□□□ -1.93
USF1P22415 RPS29P2-201ENST00000479278 136 ntBASIC2.97□□□□□ -1.93
USF1P22415 AC025518.1-201ENST00000479856 347 ntBASIC2.97□□□□□ -1.93
USF1P22415 RPS4XP13-201ENST00000483219 789 ntBASIC2.97□□□□□ -1.93
USF1P22415 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC2.97□□□□□ -1.93
USF1P22415 GMPSP1-201ENST00000514075 579 ntBASIC2.97□□□□□ -1.93
USF1P22415 RN7SKP244-201ENST00000516513 307 ntBASIC2.97□□□□□ -1.93
USF1P22415 SNORA70.18-201ENST00000516696 98 ntBASIC2.97□□□□□ -1.93
USF1P22415 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC2.97□□□□□ -1.93
USF1P22415 IGKV2D-36-201ENST00000518643 226 ntBASIC2.97□□□□□ -1.93
USF1P22415 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC2.97□□□□□ -1.93
USF1P22415 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC2.97□□□□□ -1.93
USF1P22415 AC124293.1-201ENST00000530034 493 ntBASIC2.97□□□□□ -1.93
USF1P22415 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC2.97□□□□□ -1.93
USF1P22415 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC2.97□□□□□ -1.93
USF1P22415 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC2.97□□□□□ -1.93
USF1P22415 AC010198.2-201ENST00000550612 259 ntBASIC2.97□□□□□ -1.93
USF1P22415 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC2.97□□□□□ -1.93
USF1P22415 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC2.97□□□□□ -1.93
USF1P22415 AC022069.1-201ENST00000582910 658 ntBASIC2.97□□□□□ -1.93
USF1P22415 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC2.97□□□□□ -1.93
USF1P22415 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC2.97□□□□□ -1.93
USF1P22415 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC2.97□□□□□ -1.93
USF1P22415 AC016542.1-201ENST00000608259 493 ntBASIC2.97□□□□□ -1.93
USF1P22415 AP006248.3-201ENST00000623580 594 ntBASIC2.97□□□□□ -1.93
USF1P22415 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC2.97□□□□□ -1.93
USF1P22415 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC2.96□□□□□ -1.93
USF1P22415 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC2.96□□□□□ -1.94
USF1P22415 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
USF1P22415 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC2.96□□□□□ -1.94
USF1P22415 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC2.96□□□□□ -1.94
USF1P22415 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
USF1P22415 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
USF1P22415 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
USF1P22415 RNU4-35P-201ENST00000362588 141 ntBASIC2.96□□□□□ -1.94
USF1P22415 RNU6-1226P-201ENST00000384317 107 ntBASIC2.96□□□□□ -1.94
USF1P22415 MIR591-201ENST00000385290 95 ntBASIC2.96□□□□□ -1.94
USF1P22415 SNORA48.8-201ENST00000391324 134 ntBASIC2.96□□□□□ -1.94
USF1P22415 RNU4-27P-201ENST00000410889 139 ntBASIC2.96□□□□□ -1.94
USF1P22415 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC2.96□□□□□ -1.94
USF1P22415 AL121882.1-201ENST00000422893 417 ntBASIC2.96□□□□□ -1.94
USF1P22415 AC005326.1-201ENST00000429197 123 ntBASIC2.96□□□□□ -1.94
USF1P22415 ATP5JP1-201ENST00000431631 322 ntBASIC2.96□□□□□ -1.94
USF1P22415 VDAC1P3-201ENST00000434069 851 ntBASIC2.96□□□□□ -1.94
USF1P22415 HSD52-202ENST00000436225 772 ntTSL 3 BASIC2.96□□□□□ -1.94
USF1P22415 BTBD7P2-201ENST00000441962 620 ntBASIC2.96□□□□□ -1.94
USF1P22415 AL591503.2-201ENST00000442314 1005 ntBASIC2.96□□□□□ -1.94
USF1P22415 AL929288.2-201ENST00000446368 407 ntBASIC2.96□□□□□ -1.94
USF1P22415 AL353718.1-201ENST00000451028 517 ntBASIC2.96□□□□□ -1.94
USF1P22415 HMGN3P1-201ENST00000453847 193 ntBASIC2.96□□□□□ -1.94
USF1P22415 AC010468.1-201ENST00000461022 817 ntBASIC2.96□□□□□ -1.94
USF1P22415 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC2.96□□□□□ -1.94
USF1P22415 AC008155.2-201ENST00000464337 397 ntBASIC2.96□□□□□ -1.94
USF1P22415 VN1R17P-201ENST00000472048 1090 ntBASIC2.96□□□□□ -1.94
USF1P22415 RPL23AP55-201ENST00000498163 452 ntBASIC2.96□□□□□ -1.94
USF1P22415 RN7SKP116-201ENST00000516902 319 ntBASIC2.96□□□□□ -1.94
USF1P22415 RPL12P22-201ENST00000519073 490 ntBASIC2.96□□□□□ -1.94
USF1P22415 IGJP1-201ENST00000522682 475 ntBASIC2.96□□□□□ -1.94
USF1P22415 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
USF1P22415 OR8K4P-201ENST00000534608 872 ntBASIC2.96□□□□□ -1.94
USF1P22415 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC2.96□□□□□ -1.94
USF1P22415 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC2.96□□□□□ -1.94
USF1P22415 AC092470.1-201ENST00000546187 132 ntBASIC2.96□□□□□ -1.94
USF1P22415 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC2.96□□□□□ -1.94
USF1P22415 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC2.96□□□□□ -1.94
USF1P22415 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC2.96□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 76.8 ms