Protein–RNA interactions for Protein: Q9H2S5

RNF39, RING finger protein 39, humanhuman

Predictions only

Length 420 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF39Q9H2S5 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
RNF39Q9H2S5 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
RNF39Q9H2S5 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RNF39Q9H2S5 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RNF39Q9H2S5 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
RNF39Q9H2S5 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RNF39Q9H2S5 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RNF39Q9H2S5 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RNF39Q9H2S5 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC21.24■□□□□ 0.99
RNF39Q9H2S5 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RNF39Q9H2S5 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
RNF39Q9H2S5 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC21.24■□□□□ 0.99
RNF39Q9H2S5 AL357833.2-202ENST00000413757 372 ntTSL 3 BASIC21.24■□□□□ 0.99
RNF39Q9H2S5 AC004980.1-204ENST00000429707 299 ntBASIC21.24■□□□□ 0.99
RNF39Q9H2S5 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC21.24■□□□□ 0.99
RNF39Q9H2S5 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC21.24■□□□□ 0.99
RNF39Q9H2S5 AC011506.1-201ENST00000474329 610 ntBASIC21.24■□□□□ 0.99
RNF39Q9H2S5 MTND3P3-201ENST00000505004 126 ntBASIC21.24■□□□□ 0.99
RNF39Q9H2S5 LINC02207-201ENST00000554530 1256 ntTSL 5 BASIC21.24■□□□□ 0.99
RNF39Q9H2S5 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC21.24■□□□□ 0.99
RNF39Q9H2S5 AC090772.3-201ENST00000583267 735 ntTSL 3 BASIC21.24■□□□□ 0.99
RNF39Q9H2S5 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC21.24■□□□□ 0.99
RNF39Q9H2S5 AL049536.1-201ENST00000625043 744 ntBASIC21.24■□□□□ 0.99
RNF39Q9H2S5 HLA-A-209ENST00000638375 975 ntBASIC21.24■□□□□ 0.99
RNF39Q9H2S5 AL031985.4-201ENST00000642138 673 ntBASIC21.24■□□□□ 0.99
RNF39Q9H2S5 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
RNF39Q9H2S5 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
RNF39Q9H2S5 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.24■□□□□ 0.99
RNF39Q9H2S5 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
RNF39Q9H2S5 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RNF39Q9H2S5 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RNF39Q9H2S5 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
RNF39Q9H2S5 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC21.23■□□□□ 0.99
RNF39Q9H2S5 POLR2K-201ENST00000353107 998 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RNF39Q9H2S5 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC21.23■□□□□ 0.99
RNF39Q9H2S5 RNFT1P2-201ENST00000443064 757 ntBASIC21.23■□□□□ 0.99
RNF39Q9H2S5 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
RNF39Q9H2S5 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC21.23■□□□□ 0.99
RNF39Q9H2S5 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC21.23■□□□□ 0.99
RNF39Q9H2S5 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RNF39Q9H2S5 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC21.23■□□□□ 0.99
RNF39Q9H2S5 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RNF39Q9H2S5 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RNF39Q9H2S5 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RNF39Q9H2S5 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RNF39Q9H2S5 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC21.23■□□□□ 0.99
RNF39Q9H2S5 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
RNF39Q9H2S5 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
RNF39Q9H2S5 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
RNF39Q9H2S5 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RNF39Q9H2S5 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC21.22■□□□□ 0.99
RNF39Q9H2S5 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
RNF39Q9H2S5 CYP2D8P-201ENST00000433633 1490 ntBASIC21.22■□□□□ 0.99
RNF39Q9H2S5 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RNF39Q9H2S5 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC21.22■□□□□ 0.99
RNF39Q9H2S5 CFLAR-212ENST00000440180 1198 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
RNF39Q9H2S5 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC21.22■□□□□ 0.99
RNF39Q9H2S5 AC105999.2-203ENST00000521030 663 ntTSL 3 BASIC21.22■□□□□ 0.99
RNF39Q9H2S5 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC21.22■□□□□ 0.99
RNF39Q9H2S5 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC21.22■□□□□ 0.99
RNF39Q9H2S5 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC21.22■□□□□ 0.99
RNF39Q9H2S5 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
RNF39Q9H2S5 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
RNF39Q9H2S5 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
RNF39Q9H2S5 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
RNF39Q9H2S5 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
RNF39Q9H2S5 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RNF39Q9H2S5 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RNF39Q9H2S5 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC21.22■□□□□ 0.99
RNF39Q9H2S5 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
RNF39Q9H2S5 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RNF39Q9H2S5 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RNF39Q9H2S5 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RNF39Q9H2S5 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RNF39Q9H2S5 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.21■□□□□ 0.99
RNF39Q9H2S5 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RNF39Q9H2S5 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RNF39Q9H2S5 LINC00469-201ENST00000321800 708 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RNF39Q9H2S5 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC21.21■□□□□ 0.99
RNF39Q9H2S5 RPS3AP29-201ENST00000437728 769 ntBASIC21.21■□□□□ 0.99
RNF39Q9H2S5 LYRM2-204ENST00000520441 791 ntTSL 3 BASIC21.21■□□□□ 0.99
RNF39Q9H2S5 RN7SL371P-201ENST00000578099 267 ntBASIC21.21■□□□□ 0.99
RNF39Q9H2S5 AC087289.4-201ENST00000587348 230 ntTSL 3 BASIC21.21■□□□□ 0.99
RNF39Q9H2S5 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC21.21■□□□□ 0.99
RNF39Q9H2S5 LINC01006-201ENST00000333319 2292 ntBASIC21.21■□□□□ 0.99
RNF39Q9H2S5 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC21.21■□□□□ 0.99
RNF39Q9H2S5 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RNF39Q9H2S5 CASC19-229ENST00000641418 1373 ntBASIC21.21■□□□□ 0.99
RNF39Q9H2S5 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RNF39Q9H2S5 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
RNF39Q9H2S5 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
RNF39Q9H2S5 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
RNF39Q9H2S5 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RNF39Q9H2S5 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
RNF39Q9H2S5 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
RNF39Q9H2S5 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
RNF39Q9H2S5 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RNF39Q9H2S5 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
RNF39Q9H2S5 RCN1P1-201ENST00000400413 996 ntBASIC21.2■□□□□ 0.98
RNF39Q9H2S5 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 61.2 ms