Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC22.68■■□□□ 1.22
HLA-DOAP06340 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
HLA-DOAP06340 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
HLA-DOAP06340 LINC01521-201ENST00000504184 1943 ntBASIC22.68■■□□□ 1.22
HLA-DOAP06340 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
HLA-DOAP06340 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC22.68■■□□□ 1.22
HLA-DOAP06340 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
HLA-DOAP06340 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC22.67■■□□□ 1.22
HLA-DOAP06340 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC22.67■■□□□ 1.22
HLA-DOAP06340 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC22.67■■□□□ 1.22
HLA-DOAP06340 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
HLA-DOAP06340 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
HLA-DOAP06340 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC22.67■■□□□ 1.22
HLA-DOAP06340 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC22.67■■□□□ 1.22
HLA-DOAP06340 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC22.67■■□□□ 1.22
HLA-DOAP06340 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
HLA-DOAP06340 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC22.67■■□□□ 1.22
HLA-DOAP06340 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
HLA-DOAP06340 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
HLA-DOAP06340 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
HLA-DOAP06340 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC22.67■■□□□ 1.22
HLA-DOAP06340 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC22.67■■□□□ 1.22
HLA-DOAP06340 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC22.66■■□□□ 1.22
HLA-DOAP06340 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC22.66■■□□□ 1.22
HLA-DOAP06340 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
HLA-DOAP06340 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
HLA-DOAP06340 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC22.66■■□□□ 1.22
HLA-DOAP06340 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
HLA-DOAP06340 ANKRD20A18P-201ENST00000359341 492 ntBASIC22.66■■□□□ 1.22
HLA-DOAP06340 TSPY21P-201ENST00000433481 731 ntBASIC22.66■■□□□ 1.22
HLA-DOAP06340 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC22.66■■□□□ 1.22
HLA-DOAP06340 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
HLA-DOAP06340 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC22.66■■□□□ 1.22
HLA-DOAP06340 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC22.66■■□□□ 1.22
HLA-DOAP06340 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC22.66■■□□□ 1.22
HLA-DOAP06340 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
HLA-DOAP06340 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
HLA-DOAP06340 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC22.66■■□□□ 1.22
HLA-DOAP06340 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC22.66■■□□□ 1.22
HLA-DOAP06340 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
HLA-DOAP06340 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
HLA-DOAP06340 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
HLA-DOAP06340 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
HLA-DOAP06340 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
HLA-DOAP06340 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
HLA-DOAP06340 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
HLA-DOAP06340 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
HLA-DOAP06340 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
HLA-DOAP06340 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC22.65■■□□□ 1.22
HLA-DOAP06340 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC22.65■■□□□ 1.22
HLA-DOAP06340 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
HLA-DOAP06340 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
HLA-DOAP06340 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
HLA-DOAP06340 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
HLA-DOAP06340 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
HLA-DOAP06340 TSPY5P-201ENST00000426936 936 ntBASIC22.65■■□□□ 1.22
HLA-DOAP06340 PHB2-202ENST00000440277 996 ntTSL 5 BASIC22.65■■□□□ 1.22
HLA-DOAP06340 AC092647.4-201ENST00000457211 535 ntBASIC22.65■■□□□ 1.22
HLA-DOAP06340 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
HLA-DOAP06340 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC22.65■■□□□ 1.22
HLA-DOAP06340 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
HLA-DOAP06340 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC22.65■■□□□ 1.22
HLA-DOAP06340 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC22.65■■□□□ 1.22
HLA-DOAP06340 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
HLA-DOAP06340 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC22.65■■□□□ 1.22
HLA-DOAP06340 AL031432.5-201ENST00000641059 760 ntBASIC22.65■■□□□ 1.22
HLA-DOAP06340 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC22.65■■□□□ 1.22
HLA-DOAP06340 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC22.65■■□□□ 1.22
HLA-DOAP06340 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
HLA-DOAP06340 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
HLA-DOAP06340 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
HLA-DOAP06340 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC22.65■■□□□ 1.22
HLA-DOAP06340 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
HLA-DOAP06340 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC22.65■■□□□ 1.22
HLA-DOAP06340 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC22.65■■□□□ 1.22
HLA-DOAP06340 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC22.64■■□□□ 1.22
HLA-DOAP06340 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.22
HLA-DOAP06340 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC22.64■■□□□ 1.22
HLA-DOAP06340 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
HLA-DOAP06340 GUK1-204ENST00000366721 689 ntTSL 3 BASIC22.64■■□□□ 1.21
HLA-DOAP06340 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC22.64■■□□□ 1.21
HLA-DOAP06340 FAM8A6P-201ENST00000407496 1135 ntBASIC22.64■■□□□ 1.21
HLA-DOAP06340 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC22.64■■□□□ 1.21
HLA-DOAP06340 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC22.64■■□□□ 1.21
HLA-DOAP06340 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC22.64■■□□□ 1.21
HLA-DOAP06340 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
HLA-DOAP06340 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
HLA-DOAP06340 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC22.64■■□□□ 1.21
HLA-DOAP06340 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
HLA-DOAP06340 SDHAP1-207ENST00000440850 2000 ntBASIC22.64■■□□□ 1.21
HLA-DOAP06340 USP48-205ENST00000421625 2818 ntTSL 2 BASIC22.63■■□□□ 1.21
HLA-DOAP06340 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
HLA-DOAP06340 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
HLA-DOAP06340 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
HLA-DOAP06340 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC22.63■■□□□ 1.21
HLA-DOAP06340 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC22.63■■□□□ 1.21
HLA-DOAP06340 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
HLA-DOAP06340 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
HLA-DOAP06340 COPE-203ENST00000351079 907 ntTSL 2 BASIC22.63■■□□□ 1.21
HLA-DOAP06340 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC22.63■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms