Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 CCNC-219ENST00000627680 896 ntTSL 5 BASIC14.96□□□□□ -0.01
COL6A5A8TX70 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC14.96□□□□□ -0.01
COL6A5A8TX70 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL6A5A8TX70 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC14.96□□□□□ -0.01
COL6A5A8TX70 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL6A5A8TX70 AC005229.4-201ENST00000610085 2198 ntBASIC14.96□□□□□ -0.01
COL6A5A8TX70 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL6A5A8TX70 GOLGA2P6-201ENST00000340929 2049 ntBASIC14.96□□□□□ -0.01
COL6A5A8TX70 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL6A5A8TX70 AL591424.1-201ENST00000442569 1213 ntBASIC14.96□□□□□ -0.01
COL6A5A8TX70 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC14.96□□□□□ -0.01
COL6A5A8TX70 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
COL6A5A8TX70 SCARNA2-201ENST00000458748 420 ntBASIC14.96□□□□□ -0.01
COL6A5A8TX70 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC14.96□□□□□ -0.01
COL6A5A8TX70 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC14.96□□□□□ -0.01
COL6A5A8TX70 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC14.96□□□□□ -0.01
COL6A5A8TX70 MIR4674-201ENST00000582457 87 ntBASIC14.96□□□□□ -0.01
COL6A5A8TX70 AL356488.2-201ENST00000602755 427 ntBASIC14.96□□□□□ -0.01
COL6A5A8TX70 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL6A5A8TX70 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
COL6A5A8TX70 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
COL6A5A8TX70 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
COL6A5A8TX70 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
COL6A5A8TX70 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.02
COL6A5A8TX70 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.02
COL6A5A8TX70 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
COL6A5A8TX70 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC14.96□□□□□ -0.02
COL6A5A8TX70 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC14.96□□□□□ -0.02
COL6A5A8TX70 AC090616.6-201ENST00000582640 721 ntBASIC14.96□□□□□ -0.02
COL6A5A8TX70 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
COL6A5A8TX70 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
COL6A5A8TX70 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL6A5A8TX70 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
COL6A5A8TX70 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL6A5A8TX70 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC14.95□□□□□ -0.02
COL6A5A8TX70 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC14.95□□□□□ -0.02
COL6A5A8TX70 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL6A5A8TX70 METTL21AP1-201ENST00000438852 635 ntBASIC14.95□□□□□ -0.02
COL6A5A8TX70 SART3-203ENST00000546611 1184 ntBASIC14.95□□□□□ -0.02
COL6A5A8TX70 AL160286.2-201ENST00000567150 934 ntBASIC14.95□□□□□ -0.02
COL6A5A8TX70 AC024243.1-201ENST00000609234 778 ntBASIC14.95□□□□□ -0.02
COL6A5A8TX70 AL157888.1-201ENST00000631930 593 ntBASIC14.95□□□□□ -0.02
COL6A5A8TX70 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL6A5A8TX70 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL6A5A8TX70 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
COL6A5A8TX70 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC14.95□□□□□ -0.02
COL6A5A8TX70 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL6A5A8TX70 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL6A5A8TX70 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL6A5A8TX70 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
COL6A5A8TX70 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
COL6A5A8TX70 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL6A5A8TX70 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
COL6A5A8TX70 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC14.95□□□□□ -0.02
COL6A5A8TX70 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
COL6A5A8TX70 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A5A8TX70 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A5A8TX70 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A5A8TX70 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A5A8TX70 MED15P5-201ENST00000423150 992 ntBASIC14.94□□□□□ -0.02
COL6A5A8TX70 AC004832.2-201ENST00000426397 482 ntBASIC14.94□□□□□ -0.02
COL6A5A8TX70 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC14.94□□□□□ -0.02
COL6A5A8TX70 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC14.94□□□□□ -0.02
COL6A5A8TX70 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC14.94□□□□□ -0.02
COL6A5A8TX70 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC14.94□□□□□ -0.02
COL6A5A8TX70 AC099336.1-202ENST00000602961 463 ntBASIC14.94□□□□□ -0.02
COL6A5A8TX70 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
COL6A5A8TX70 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A5A8TX70 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A5A8TX70 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC14.94□□□□□ -0.02
COL6A5A8TX70 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A5A8TX70 ZNF259P1-201ENST00000407656 1365 ntBASIC14.94□□□□□ -0.02
COL6A5A8TX70 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
COL6A5A8TX70 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A5A8TX70 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC14.94□□□□□ -0.02
COL6A5A8TX70 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A5A8TX70 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A5A8TX70 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A5A8TX70 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A5A8TX70 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC14.94□□□□□ -0.02
COL6A5A8TX70 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC14.94□□□□□ -0.02
COL6A5A8TX70 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC14.94□□□□□ -0.02
COL6A5A8TX70 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
COL6A5A8TX70 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
COL6A5A8TX70 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
COL6A5A8TX70 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A5A8TX70 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A5A8TX70 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC14.93□□□□□ -0.02
COL6A5A8TX70 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC14.93□□□□□ -0.02
COL6A5A8TX70 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC14.93□□□□□ -0.02
COL6A5A8TX70 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC14.93□□□□□ -0.02
COL6A5A8TX70 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC14.93□□□□□ -0.02
COL6A5A8TX70 ORC5-208ENST00000626700 344 ntTSL 3 BASIC14.93□□□□□ -0.02
COL6A5A8TX70 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC14.93□□□□□ -0.02
COL6A5A8TX70 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC14.93□□□□□ -0.02
COL6A5A8TX70 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
COL6A5A8TX70 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A5A8TX70 KRT18P28-201ENST00000453838 1332 ntBASIC14.93□□□□□ -0.02
COL6A5A8TX70 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
COL6A5A8TX70 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC14.93□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms