Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 RPL23AP89-201ENST00000439324 255 ntBASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 PRDX3P3-201ENST00000447765 522 ntBASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 RPL21P11-201ENST00000461458 483 ntBASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 DYNLL1P6-201ENST00000503440 264 ntBASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 RNU6-885P-201ENST00000516607 104 ntBASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 SCARNA13-201ENST00000516672 275 ntBASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 AP000790.1-201ENST00000528891 737 ntBASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 OR4A12P-201ENST00000530847 918 ntBASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 AC091515.1-201ENST00000548110 679 ntBASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 MIR4509-3-201ENST00000578671 94 ntBASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 AC012417.1-201ENST00000582307 1039 ntBASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 MIR4509-2-201ENST00000583920 94 ntBASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 AC025588.3-201ENST00000604182 274 ntBASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 AC091167.4-201ENST00000605079 184 ntBASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 U3.45-201ENST00000607547 219 ntBASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 AC090425.2-201ENST00000608818 501 ntBASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 AC090116.1-201ENST00000615679 446 ntBASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 MIR4509-1-201ENST00000618224 94 ntBASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 AP001350.1-201ENST00000601906 1524 ntBASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 AC004925.1-201ENST00000624256 2706 ntBASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
PCDHGA1Q9Y5H4 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 OTUD4P1-201ENST00000237841 3067 ntBASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 AL079305.1-201ENST00000623159 3008 ntBASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 AL365440.1-201ENST00000436135 2167 ntBASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 SUCLA2P2-201ENST00000417269 1309 ntBASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 SNORD35B-201ENST00000363660 87 ntBASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 RNU6-707P-201ENST00000364647 95 ntBASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 Y_RNA.493-201ENST00000384422 102 ntBASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 MIR183-201ENST00000384958 110 ntBASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 ATP5F1P4-201ENST00000397288 746 ntBASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 RPS23P10-201ENST00000416185 486 ntBASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 AIMP1P1-201ENST00000418670 937 ntBASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 AC106883.1-201ENST00000418805 562 ntBASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 DPRXP1-201ENST00000426312 460 ntBASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 HMGN2P31-201ENST00000432430 273 ntBASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 EXOSC3P1-201ENST00000448649 500 ntBASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 UBE2V1P12-201ENST00000503954 474 ntBASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 HNRNPKP5-201ENST00000515300 253 ntBASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 MTND1P6-201ENST00000523621 946 ntBASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 RPL23AP87-202ENST00000573039 466 ntBASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 MIR5708-201ENST00000579723 85 ntBASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 ZNF415P1-201ENST00000582279 1166 ntBASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 BNIP3P40-201ENST00000596017 556 ntBASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 AL035411.2-201ENST00000604022 421 ntBASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 AL451044.1-201ENST00000604867 238 ntBASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 PART1_2.1-201ENST00000612397 250 ntBASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 AL139089.1-201ENST00000620372 975 ntBASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 OR4G3P-201ENST00000633500 913 ntBASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
PCDHGA1Q9Y5H4 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 126.2 ms