Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC018552.1-201ENST00000562099 811 ntBASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 AC034105.3-201ENST00000565294 442 ntBASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 AC006270.2-201ENST00000578523 652 ntBASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 WWOX-217ENST00000620008 450 ntTSL 2 BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 AL596275.2-204ENST00000641628 552 ntBASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 AL596275.2-206ENST00000641957 626 ntBASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC39Q9UFE4 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 CASC19-221ENST00000641309 1382 ntBASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 RNU6-1339P-201ENST00000363574 91 ntBASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 Y_RNA.159-201ENST00000363674 87 ntBASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 RNU4-70P-201ENST00000384579 139 ntBASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 RNU6-244P-201ENST00000391028 104 ntBASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 U3.25-201ENST00000391209 220 ntBASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 AL035079.1-201ENST00000405210 287 ntBASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 FABP7P2-201ENST00000429946 379 ntBASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 AL513175.1-201ENST00000431492 780 ntBASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 SNRPEP4-201ENST00000435815 279 ntBASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 PPIAP17-201ENST00000438507 471 ntBASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 NPM1P39-201ENST00000449818 867 ntBASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 CECR9-201ENST00000453421 199 ntBASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 RNU6-1208P-201ENST00000459588 107 ntBASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 AP000942.1-201ENST00000463969 747 ntBASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 AC108751.2-201ENST00000469993 231 ntBASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 MTND1P3-201ENST00000484956 952 ntBASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 AC020890.1-201ENST00000491837 504 ntBASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 RN7SL101P-201ENST00000496350 279 ntBASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 PGAM1P13-201ENST00000507497 754 ntBASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 MTND5P4-201ENST00000514978 288 ntBASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 Y_RNA.691-201ENST00000516611 103 ntBASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 RNU6-835P-201ENST00000516974 104 ntBASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 LY96-202ENST00000518893 430 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 AC107953.1-201ENST00000522216 297 ntBASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 IGKV2-18-201ENST00000522607 343 ntBASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 OR5B19P-201ENST00000531766 928 ntBASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 AC087241.2-201ENST00000535801 324 ntBASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 AC023050.3-201ENST00000541142 333 ntBASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 RPLP0-225ENST00000552292 720 ntTSL 2 BASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 AC068714.1-201ENST00000559623 800 ntBASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 RN7SL52P-201ENST00000584271 284 ntBASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 AC104237.2-201ENST00000612456 443 ntBASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 AC091925.1-201ENST00000623204 462 ntBASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 CDR1-202ENST00000625883 1485 ntBASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 DDX18P4-201ENST00000511690 1966 ntBASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC5.82□□□□□ -1.48
CCDC39Q9UFE4 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 RNU6-282P-201ENST00000365357 103 ntBASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 Y_RNA.381-201ENST00000365666 102 ntBASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 SNORA22B-201ENST00000383876 138 ntBASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 AL589647.1-201ENST00000402485 466 ntBASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 MIR1182-201ENST00000408363 97 ntBASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 RN7SKP222-201ENST00000410651 315 ntBASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 MTND3P8-201ENST00000412909 339 ntBASIC5.81□□□□□ -1.48
CCDC39Q9UFE4 SPA17P1-201ENST00000416656 452 ntBASIC5.81□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms