Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RPS3AP54-201ENST00000435535 734 ntBASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 SKP1P1-201ENST00000438081 489 ntBASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 AL031667.1-201ENST00000440222 725 ntBASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 HMGB3P9-201ENST00000441799 583 ntBASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 HSPE1P28-201ENST00000443139 211 ntBASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 GDI2P2-201ENST00000445131 608 ntBASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 GEMIN8P3-201ENST00000445417 720 ntBASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 USP9YP12-201ENST00000450481 570 ntBASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 OR6K1P-201ENST00000456766 971 ntBASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 AC093899.1-201ENST00000457984 376 ntBASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 snoU109.1-201ENST00000459339 135 ntBASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 AP002748.2-201ENST00000528671 348 ntBASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 AC022878.1-201ENST00000530684 149 ntBASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 MTATP6P3-201ENST00000581686 676 ntBASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 MIR5096-201ENST00000583713 70 ntBASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 MIR4715-201ENST00000584117 79 ntBASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 MIR6758-201ENST00000620653 63 ntBASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 AC000123.3-201ENST00000624029 4975 ntBASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 ZNF137P-201ENST00000456718 1920 ntBASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 AC108751.5-201ENST00000492880 1336 ntBASIC4.46□□□□□ -1.7
PTCHD3Q3KNS1 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 MAPK10-286ENST00000641208 8747 ntBASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 RPL32P3-201ENST00000359025 275 ntBASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 RNA5-8SP7-201ENST00000363443 155 ntBASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 RNU6-289P-201ENST00000364093 107 ntBASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 SNORD113.2-201ENST00000364166 89 ntBASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 SNORA71.2-201ENST00000364941 134 ntBASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 BTBD10P2-201ENST00000404779 676 ntBASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 RAB28P1-201ENST00000411517 641 ntBASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 USP9YP13-201ENST00000417797 480 ntBASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 AC012065.2-201ENST00000421295 375 ntBASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 RPL21P91-201ENST00000429231 479 ntBASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 RPS20P1-201ENST00000434853 354 ntBASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 PABPC1P3-201ENST00000469174 459 ntBASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 BNIP3P41-201ENST00000503774 571 ntBASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 AC010460.1-201ENST00000507087 466 ntBASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 AC034159.1-201ENST00000513885 583 ntBASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 RNA5SP446-201ENST00000515955 82 ntBASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 MAL2-203ENST00000534619 578 ntTSL 4 BASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 AC084757.1-201ENST00000559987 490 ntBASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 BNIP3P8-201ENST00000597863 560 ntBASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 RPL12P25-202ENST00000598100 674 ntBASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 AC103792.1-201ENST00000603591 919 ntBASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 AC008966.2-201ENST00000606157 453 ntBASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 AC090948.2-201ENST00000607363 564 ntBASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 AC097714.1-201ENST00000511272 1647 ntBASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.45□□□□□ -1.7
PTCHD3Q3KNS1 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.44□□□□□ -1.7
PTCHD3Q3KNS1 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms