Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 AL049870.4-201ENST00000555741 486 ntBASIC3.36□□□□□ -1.87
SHHQ15465 AC106785.3-201ENST00000564064 847 ntBASIC3.36□□□□□ -1.87
SHHQ15465 AC106734.1-201ENST00000568646 663 ntBASIC3.36□□□□□ -1.87
SHHQ15465 MIR5047-201ENST00000579212 100 ntBASIC3.36□□□□□ -1.87
SHHQ15465 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC3.36□□□□□ -1.87
SHHQ15465 AC083899.3-201ENST00000603413 594 ntBASIC3.36□□□□□ -1.87
SHHQ15465 AC055764.2-201ENST00000610089 670 ntBASIC3.36□□□□□ -1.87
SHHQ15465 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
SHHQ15465 AP000720.1-201ENST00000625091 483 ntBASIC3.36□□□□□ -1.87
SHHQ15465 METTL8-218ENST00000638989 876 ntTSL 5 BASIC3.36□□□□□ -1.87
SHHQ15465 METTL8-219ENST00000640734 726 ntTSL 2 BASIC3.36□□□□□ -1.87
SHHQ15465 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
SHHQ15465 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
SHHQ15465 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
SHHQ15465 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
SHHQ15465 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.35□□□□□ -1.87
SHHQ15465 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SHHQ15465 RNU6-283P-201ENST00000364788 107 ntBASIC3.35□□□□□ -1.87
SHHQ15465 SNORA18.3-201ENST00000384122 132 ntBASIC3.35□□□□□ -1.87
SHHQ15465 SNORA70B-201ENST00000384210 135 ntBASIC3.35□□□□□ -1.87
SHHQ15465 RNU4-31P-201ENST00000384211 141 ntBASIC3.35□□□□□ -1.87
SHHQ15465 SNORD67-201ENST00000390833 111 ntBASIC3.35□□□□□ -1.87
SHHQ15465 RNU6-244P-201ENST00000391028 104 ntBASIC3.35□□□□□ -1.87
SHHQ15465 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC3.35□□□□□ -1.87
SHHQ15465 AC012065.2-201ENST00000421295 375 ntBASIC3.35□□□□□ -1.87
SHHQ15465 MTCO1P57-201ENST00000432182 261 ntBASIC3.35□□□□□ -1.87
SHHQ15465 MTCO1P52-201ENST00000433928 531 ntBASIC3.35□□□□□ -1.87
SHHQ15465 RPL21P112-201ENST00000434403 463 ntBASIC3.35□□□□□ -1.87
SHHQ15465 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC3.35□□□□□ -1.87
SHHQ15465 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC3.35□□□□□ -1.87
SHHQ15465 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC3.35□□□□□ -1.87
SHHQ15465 HMGB3P8-201ENST00000449709 577 ntBASIC3.35□□□□□ -1.87
SHHQ15465 RPS4XP22-201ENST00000480755 780 ntBASIC3.35□□□□□ -1.87
SHHQ15465 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC3.35□□□□□ -1.87
SHHQ15465 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.35□□□□□ -1.87
SHHQ15465 OR5AP1P-201ENST00000529730 940 ntBASIC3.35□□□□□ -1.87
SHHQ15465 AC074029.2-201ENST00000551045 634 ntBASIC3.35□□□□□ -1.87
SHHQ15465 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC3.35□□□□□ -1.87
SHHQ15465 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC3.35□□□□□ -1.87
SHHQ15465 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC3.35□□□□□ -1.87
SHHQ15465 CYCSP39-201ENST00000565821 309 ntBASIC3.35□□□□□ -1.87
SHHQ15465 ATP5F1P7-201ENST00000567330 760 ntBASIC3.35□□□□□ -1.87
SHHQ15465 MIR4425-201ENST00000580572 84 ntBASIC3.35□□□□□ -1.87
SHHQ15465 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.35□□□□□ -1.87
SHHQ15465 AC022387.2-201ENST00000604050 448 ntBASIC3.35□□□□□ -1.87
SHHQ15465 RPL21P136-201ENST00000605378 396 ntBASIC3.35□□□□□ -1.87
SHHQ15465 AC119674.1-220ENST00000641502 1048 ntBASIC3.35□□□□□ -1.87
SHHQ15465 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SHHQ15465 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SHHQ15465 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
SHHQ15465 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
SHHQ15465 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SHHQ15465 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.35□□□□□ -1.87
SHHQ15465 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
SHHQ15465 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
SHHQ15465 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
SHHQ15465 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
SHHQ15465 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
SHHQ15465 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
SHHQ15465 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
SHHQ15465 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC3.34□□□□□ -1.87
SHHQ15465 OFD1P11Y-201ENST00000418213 1177 ntBASIC3.34□□□□□ -1.87
SHHQ15465 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC3.34□□□□□ -1.87
SHHQ15465 MTATP6P11-201ENST00000428071 670 ntBASIC3.34□□□□□ -1.87
SHHQ15465 AL031663.1-201ENST00000437445 219 ntBASIC3.34□□□□□ -1.87
SHHQ15465 AP000949.1-201ENST00000438328 629 ntBASIC3.34□□□□□ -1.87
SHHQ15465 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC3.34□□□□□ -1.87
SHHQ15465 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC3.34□□□□□ -1.87
SHHQ15465 MED6P1-201ENST00000439659 713 ntBASIC3.34□□□□□ -1.87
SHHQ15465 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC3.34□□□□□ -1.87
SHHQ15465 RPL23AP62-201ENST00000463396 453 ntBASIC3.34□□□□□ -1.87
SHHQ15465 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC3.34□□□□□ -1.87
SHHQ15465 TRAV31-201ENST00000502780 342 ntBASIC3.34□□□□□ -1.87
SHHQ15465 RN7SKP82-201ENST00000516786 223 ntBASIC3.34□□□□□ -1.87
SHHQ15465 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC3.34□□□□□ -1.87
SHHQ15465 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC3.34□□□□□ -1.87
SHHQ15465 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC3.34□□□□□ -1.87
SHHQ15465 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC3.34□□□□□ -1.87
SHHQ15465 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC3.34□□□□□ -1.87
SHHQ15465 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC3.34□□□□□ -1.87
SHHQ15465 AC023158.1-201ENST00000561632 1025 ntBASIC3.34□□□□□ -1.87
SHHQ15465 AC009097.3-201ENST00000563557 1018 ntBASIC3.34□□□□□ -1.87
SHHQ15465 AC010680.4-201ENST00000605334 543 ntBASIC3.34□□□□□ -1.87
SHHQ15465 AC009032.1-201ENST00000617574 431 ntBASIC3.34□□□□□ -1.87
SHHQ15465 AC104820.1-201ENST00000624183 307 ntBASIC3.34□□□□□ -1.87
SHHQ15465 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.87
SHHQ15465 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.88
SHHQ15465 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
SHHQ15465 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.34□□□□□ -1.88
SHHQ15465 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
SHHQ15465 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.34□□□□□ -1.88
SHHQ15465 AL049780.3-201ENST00000624612 1583 ntBASIC3.34□□□□□ -1.88
SHHQ15465 AC017071.1-201ENST00000564407 2204 ntBASIC3.34□□□□□ -1.88
SHHQ15465 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
SHHQ15465 NCAPGP1-201ENST00000505112 1814 ntBASIC3.33□□□□□ -1.88
SHHQ15465 XGY1-201ENST00000381172 446 ntBASIC3.33□□□□□ -1.88
SHHQ15465 MIR887-201ENST00000401258 79 ntBASIC3.33□□□□□ -1.88
SHHQ15465 AL356968.1-201ENST00000416622 474 ntBASIC3.33□□□□□ -1.88
SHHQ15465 AC019097.1-201ENST00000424783 735 ntBASIC3.33□□□□□ -1.88
SHHQ15465 AL445528.1-201ENST00000426330 420 ntBASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms