Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 MIR27B-201ENST00000385129 97 ntBASIC3.43□□□□□ -1.86
COL18A1P39060 AC098592.2-201ENST00000413158 265 ntBASIC3.43□□□□□ -1.86
COL18A1P39060 AL451074.5-201ENST00000415894 435 ntBASIC3.43□□□□□ -1.86
COL18A1P39060 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC3.43□□□□□ -1.86
COL18A1P39060 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.43□□□□□ -1.86
COL18A1P39060 AC105918.1-201ENST00000474399 838 ntBASIC3.43□□□□□ -1.86
COL18A1P39060 KLHL2P1-201ENST00000508691 521 ntBASIC3.43□□□□□ -1.86
COL18A1P39060 AL442163.2-201ENST00000553912 710 ntBASIC3.43□□□□□ -1.86
COL18A1P39060 AC022069.1-201ENST00000582910 658 ntBASIC3.43□□□□□ -1.86
COL18A1P39060 AC009977.1-201ENST00000586015 570 ntBASIC3.43□□□□□ -1.86
COL18A1P39060 AC010620.2-201ENST00000600135 313 ntBASIC3.43□□□□□ -1.86
COL18A1P39060 AL392112.1-201ENST00000605115 829 ntBASIC3.43□□□□□ -1.86
COL18A1P39060 CR381653.2-201ENST00000624041 768 ntBASIC3.43□□□□□ -1.86
COL18A1P39060 AP003499.2-201ENST00000624100 483 ntBASIC3.43□□□□□ -1.86
COL18A1P39060 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC3.42□□□□□ -1.86
COL18A1P39060 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC3.42□□□□□ -1.86
COL18A1P39060 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
COL18A1P39060 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
COL18A1P39060 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.42□□□□□ -1.86
COL18A1P39060 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.42□□□□□ -1.86
COL18A1P39060 AL590290.1-201ENST00000405336 380 ntBASIC3.42□□□□□ -1.86
COL18A1P39060 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.42□□□□□ -1.86
COL18A1P39060 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
COL18A1P39060 HMGB1P25-201ENST00000468402 607 ntBASIC3.42□□□□□ -1.86
COL18A1P39060 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.42□□□□□ -1.86
COL18A1P39060 RNU4-18P-201ENST00000516751 149 ntBASIC3.42□□□□□ -1.86
COL18A1P39060 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC3.42□□□□□ -1.86
COL18A1P39060 IGLVIV-53-201ENST00000520107 367 ntBASIC3.42□□□□□ -1.86
COL18A1P39060 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC3.42□□□□□ -1.86
COL18A1P39060 AC100870.1-201ENST00000522035 505 ntBASIC3.42□□□□□ -1.86
COL18A1P39060 AL355836.1-201ENST00000555951 870 ntBASIC3.42□□□□□ -1.86
COL18A1P39060 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC3.42□□□□□ -1.86
COL18A1P39060 AC008277.2-201ENST00000605196 797 ntBASIC3.42□□□□□ -1.86
COL18A1P39060 AP002967.1-201ENST00000624203 539 ntBASIC3.42□□□□□ -1.86
COL18A1P39060 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC3.42□□□□□ -1.86
COL18A1P39060 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
COL18A1P39060 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
COL18A1P39060 OR11H5P-202ENST00000641612 1325 ntBASIC3.41□□□□□ -1.86
COL18A1P39060 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
COL18A1P39060 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.41□□□□□ -1.86
COL18A1P39060 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC3.41□□□□□ -1.86
COL18A1P39060 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
COL18A1P39060 RNU6-1263P-201ENST00000384601 106 ntBASIC3.41□□□□□ -1.86
COL18A1P39060 RNU6ATAC3P-201ENST00000387974 126 ntBASIC3.41□□□□□ -1.86
COL18A1P39060 AL359511.1-201ENST00000402970 211 ntBASIC3.41□□□□□ -1.86
COL18A1P39060 AL138878.1-201ENST00000405131 347 ntBASIC3.41□□□□□ -1.86
COL18A1P39060 RNU6ATAC37P-201ENST00000408328 131 ntBASIC3.41□□□□□ -1.86
COL18A1P39060 AC125238.1-201ENST00000448842 249 ntBASIC3.41□□□□□ -1.86
COL18A1P39060 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC3.41□□□□□ -1.86
COL18A1P39060 OR6K1P-201ENST00000456766 971 ntBASIC3.41□□□□□ -1.86
COL18A1P39060 AC068657.1-201ENST00000520807 306 ntBASIC3.41□□□□□ -1.86
COL18A1P39060 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC3.41□□□□□ -1.86
COL18A1P39060 MIR4648-201ENST00000580107 72 ntBASIC3.41□□□□□ -1.86
COL18A1P39060 AC067838.1-201ENST00000606064 577 ntBASIC3.41□□□□□ -1.86
COL18A1P39060 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
COL18A1P39060 MIR148B-201ENST00000362252 99 ntBASIC3.4□□□□□ -1.86
COL18A1P39060 Z98742.3-201ENST00000418637 326 ntBASIC3.4□□□□□ -1.86
COL18A1P39060 NANOGP5-201ENST00000424456 877 ntBASIC3.4□□□□□ -1.86
COL18A1P39060 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC3.4□□□□□ -1.86
COL18A1P39060 MTND4LP12-201ENST00000448237 295 ntBASIC3.4□□□□□ -1.86
COL18A1P39060 SRI-210ENST00000490437 570 ntTSL 2 BASIC3.4□□□□□ -1.86
COL18A1P39060 RN7SKP244-201ENST00000516513 307 ntBASIC3.4□□□□□ -1.86
COL18A1P39060 MTND2P13-201ENST00000577438 1039 ntBASIC3.4□□□□□ -1.86
COL18A1P39060 AL008729.2-201ENST00000606393 473 ntBASIC3.4□□□□□ -1.86
COL18A1P39060 SNORA35B-201ENST00000607417 129 ntBASIC3.4□□□□□ -1.86
COL18A1P39060 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
COL18A1P39060 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.87
COL18A1P39060 AC087565.3-202ENST00000642085 1603 ntBASIC3.4□□□□□ -1.87
COL18A1P39060 RNU6-618P-201ENST00000363518 112 ntBASIC3.4□□□□□ -1.87
COL18A1P39060 RNVU1-3-201ENST00000364313 161 ntBASIC3.4□□□□□ -1.87
COL18A1P39060 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC3.4□□□□□ -1.87
COL18A1P39060 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC3.4□□□□□ -1.87
COL18A1P39060 HMGN2P3-201ENST00000433603 273 ntBASIC3.4□□□□□ -1.87
COL18A1P39060 HMGN2P5-201ENST00000436882 273 ntBASIC3.4□□□□□ -1.87
COL18A1P39060 PPIAP17-201ENST00000438507 471 ntBASIC3.4□□□□□ -1.87
COL18A1P39060 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.4□□□□□ -1.87
COL18A1P39060 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC3.4□□□□□ -1.87
COL18A1P39060 RPS6P2-201ENST00000454208 705 ntBASIC3.4□□□□□ -1.87
COL18A1P39060 HSPE1P22-201ENST00000456856 327 ntBASIC3.4□□□□□ -1.87
COL18A1P39060 AC010468.1-201ENST00000461022 817 ntBASIC3.4□□□□□ -1.87
COL18A1P39060 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC3.4□□□□□ -1.87
COL18A1P39060 MIR3605-201ENST00000583214 100 ntBASIC3.4□□□□□ -1.87
COL18A1P39060 AC009159.1-201ENST00000618386 642 ntBASIC3.4□□□□□ -1.87
COL18A1P39060 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.39□□□□□ -1.87
COL18A1P39060 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
COL18A1P39060 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
COL18A1P39060 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
COL18A1P39060 OR52B1P-201ENST00000316506 909 ntBASIC3.39□□□□□ -1.87
COL18A1P39060 ATP5F1P6-201ENST00000402768 767 ntBASIC3.39□□□□□ -1.87
COL18A1P39060 AL512430.2-201ENST00000406786 339 ntBASIC3.39□□□□□ -1.87
COL18A1P39060 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
COL18A1P39060 AL356320.1-201ENST00000429616 163 ntBASIC3.39□□□□□ -1.87
COL18A1P39060 HMGN1P5-201ENST00000448591 263 ntBASIC3.39□□□□□ -1.87
COL18A1P39060 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC3.39□□□□□ -1.87
COL18A1P39060 RN7SL636P-201ENST00000497504 294 ntBASIC3.39□□□□□ -1.87
COL18A1P39060 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.39□□□□□ -1.87
COL18A1P39060 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC3.39□□□□□ -1.87
COL18A1P39060 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
COL18A1P39060 ERP27-202ENST00000540097 993 ntTSL 2 BASIC3.39□□□□□ -1.87
COL18A1P39060 CD24P2-201ENST00000565486 219 ntBASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms