Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC4.49□□□□□ -1.69
HOXC9P31274 PCNAP1-202ENST00000595299 752 ntBASIC4.49□□□□□ -1.69
HOXC9P31274 AC020914.4-201ENST00000597690 277 ntBASIC4.49□□□□□ -1.69
HOXC9P31274 AC010200.2-201ENST00000605098 235 ntBASIC4.49□□□□□ -1.69
HOXC9P31274 RDM1-219ENST00000615378 542 ntTSL 3 BASIC4.49□□□□□ -1.69
HOXC9P31274 AC009159.2-201ENST00000617603 606 ntBASIC4.49□□□□□ -1.69
HOXC9P31274 OR6C71P-202ENST00000641886 1107 ntBASIC4.49□□□□□ -1.69
HOXC9P31274 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
HOXC9P31274 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
HOXC9P31274 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
HOXC9P31274 NCAPGP1-201ENST00000505112 1814 ntBASIC4.49□□□□□ -1.69
HOXC9P31274 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC4.48□□□□□ -1.69
HOXC9P31274 AL353743.4-201ENST00000422653 1547 ntBASIC4.48□□□□□ -1.69
HOXC9P31274 AC046144.1-201ENST00000478559 1853 ntBASIC4.48□□□□□ -1.69
HOXC9P31274 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC4.48□□□□□ -1.69
HOXC9P31274 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
HOXC9P31274 RNU4-51P-201ENST00000364206 140 ntBASIC4.48□□□□□ -1.69
HOXC9P31274 RNU6-1242P-201ENST00000391052 103 ntBASIC4.48□□□□□ -1.69
HOXC9P31274 SNORA11.2-201ENST00000408318 127 ntBASIC4.48□□□□□ -1.69
HOXC9P31274 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC4.48□□□□□ -1.69
HOXC9P31274 HIGD1AP15-201ENST00000416198 280 ntBASIC4.48□□□□□ -1.69
HOXC9P31274 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC4.48□□□□□ -1.69
HOXC9P31274 AC009965.2-201ENST00000425328 970 ntBASIC4.48□□□□□ -1.69
HOXC9P31274 AL009174.1-201ENST00000426577 416 ntBASIC4.48□□□□□ -1.69
HOXC9P31274 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC4.48□□□□□ -1.69
HOXC9P31274 AF228730.2-201ENST00000438784 848 ntBASIC4.48□□□□□ -1.69
HOXC9P31274 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC4.48□□□□□ -1.69
HOXC9P31274 AL591719.1-201ENST00000444669 744 ntBASIC4.48□□□□□ -1.69
HOXC9P31274 AC112492.1-201ENST00000449607 712 ntBASIC4.48□□□□□ -1.69
HOXC9P31274 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC4.48□□□□□ -1.69
HOXC9P31274 RPS6P2-201ENST00000454208 705 ntBASIC4.48□□□□□ -1.69
HOXC9P31274 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC4.48□□□□□ -1.69
HOXC9P31274 S100A11P2-201ENST00000467589 312 ntBASIC4.48□□□□□ -1.69
HOXC9P31274 TAF8-207ENST00000482432 556 ntTSL 2 BASIC4.48□□□□□ -1.69
HOXC9P31274 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
HOXC9P31274 AC006445.1-201ENST00000491925 405 ntBASIC4.48□□□□□ -1.69
HOXC9P31274 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC4.48□□□□□ -1.69
HOXC9P31274 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC4.48□□□□□ -1.69
HOXC9P31274 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC4.48□□□□□ -1.69
HOXC9P31274 AL442163.2-201ENST00000553912 710 ntBASIC4.48□□□□□ -1.69
HOXC9P31274 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC4.48□□□□□ -1.69
HOXC9P31274 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
HOXC9P31274 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC4.48□□□□□ -1.69
HOXC9P31274 MTND3P19-201ENST00000603825 345 ntBASIC4.48□□□□□ -1.69
HOXC9P31274 AL162713.1-201ENST00000604480 262 ntBASIC4.48□□□□□ -1.69
HOXC9P31274 AC093424.1-201ENST00000604999 338 ntBASIC4.48□□□□□ -1.69
HOXC9P31274 MIR486-1-201ENST00000612171 68 ntBASIC4.48□□□□□ -1.69
HOXC9P31274 AC135507.2-201ENST00000612443 309 ntBASIC4.48□□□□□ -1.69
HOXC9P31274 AC022149.2-201ENST00000621061 203 ntBASIC4.48□□□□□ -1.69
HOXC9P31274 AC109454.4-201ENST00000623411 649 ntBASIC4.48□□□□□ -1.69
HOXC9P31274 UGP2-231ENST00000627474 264 ntTSL 5 BASIC4.48□□□□□ -1.69
HOXC9P31274 GMFB-210ENST00000628554 639 ntTSL 4 BASIC4.48□□□□□ -1.69
HOXC9P31274 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
HOXC9P31274 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
HOXC9P31274 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.48□□□□□ -1.69
HOXC9P31274 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
HOXC9P31274 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.47□□□□□ -1.69
HOXC9P31274 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC4.47□□□□□ -1.69
HOXC9P31274 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
HOXC9P31274 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
HOXC9P31274 RPL23AP57-201ENST00000332361 466 ntBASIC4.47□□□□□ -1.69
HOXC9P31274 RNU1-18P-201ENST00000363062 164 ntBASIC4.47□□□□□ -1.69
HOXC9P31274 AC019155.1-201ENST00000382242 574 ntBASIC4.47□□□□□ -1.69
HOXC9P31274 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC4.47□□□□□ -1.69
HOXC9P31274 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
HOXC9P31274 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC4.47□□□□□ -1.69
HOXC9P31274 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC4.47□□□□□ -1.69
HOXC9P31274 NANOGP2-201ENST00000435391 727 ntBASIC4.47□□□□□ -1.69
HOXC9P31274 SKP1P1-201ENST00000438081 489 ntBASIC4.47□□□□□ -1.69
HOXC9P31274 AC006028.1-201ENST00000438379 402 ntBASIC4.47□□□□□ -1.69
HOXC9P31274 AL589880.1-201ENST00000448271 287 ntBASIC4.47□□□□□ -1.69
HOXC9P31274 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC4.47□□□□□ -1.69
HOXC9P31274 SNORD11.1-201ENST00000459482 85 ntBASIC4.47□□□□□ -1.69
HOXC9P31274 RN7SL93P-201ENST00000463035 293 ntBASIC4.47□□□□□ -1.69
HOXC9P31274 AC010469.1-201ENST00000463864 576 ntBASIC4.47□□□□□ -1.69
HOXC9P31274 AC015724.1-201ENST00000478577 156 ntBASIC4.47□□□□□ -1.69
HOXC9P31274 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC4.47□□□□□ -1.69
HOXC9P31274 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.47□□□□□ -1.69
HOXC9P31274 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC4.47□□□□□ -1.69
HOXC9P31274 AC023813.2-201ENST00000564321 469 ntBASIC4.47□□□□□ -1.69
HOXC9P31274 MTND3P13-201ENST00000574391 343 ntBASIC4.47□□□□□ -1.69
HOXC9P31274 AP005262.1-201ENST00000582646 997 ntBASIC4.47□□□□□ -1.69
HOXC9P31274 AC073657.2-201ENST00000605661 303 ntBASIC4.47□□□□□ -1.69
HOXC9P31274 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC4.47□□□□□ -1.69
HOXC9P31274 AC109809.1-201ENST00000619665 545 ntBASIC4.47□□□□□ -1.69
HOXC9P31274 AC013470.4-201ENST00000619978 986 ntBASIC4.47□□□□□ -1.69
HOXC9P31274 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
HOXC9P31274 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.47□□□□□ -1.69
HOXC9P31274 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.47□□□□□ -1.69
HOXC9P31274 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
HOXC9P31274 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC4.47□□□□□ -1.69
HOXC9P31274 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
HOXC9P31274 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
HOXC9P31274 AC083843.3-201ENST00000623679 2186 ntBASIC4.47□□□□□ -1.69
HOXC9P31274 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
HOXC9P31274 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
HOXC9P31274 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC4.47□□□□□ -1.69
HOXC9P31274 AC058791.1-201ENST00000608412 3198 ntBASIC4.47□□□□□ -1.69
HOXC9P31274 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
HOXC9P31274 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms