Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC090740.1-201ENST00000623193 2262 ntBASIC6.64□□□□□ -1.35
COL9A1P20849 SP110-201ENST00000258381 2426 ntAPPRIS P4 TSL 2 BASIC6.64□□□□□ -1.35
COL9A1P20849 RIF1-201ENST00000243326 15003 ntAPPRIS P3 TSL 1 (best) BASIC6.64□□□□□ -1.35
COL9A1P20849 U8.8-201ENST00000365399 135 ntBASIC6.64□□□□□ -1.35
COL9A1P20849 AL160275.3-201ENST00000423876 471 ntBASIC6.64□□□□□ -1.35
COL9A1P20849 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC6.64□□□□□ -1.35
COL9A1P20849 AC006946.1-201ENST00000429106 328 ntBASIC6.64□□□□□ -1.35
COL9A1P20849 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC6.64□□□□□ -1.35
COL9A1P20849 AL591043.1-201ENST00000432461 424 ntBASIC6.64□□□□□ -1.35
COL9A1P20849 AC093414.1-201ENST00000434712 514 ntBASIC6.64□□□□□ -1.35
COL9A1P20849 RPS12P17-201ENST00000438591 377 ntBASIC6.64□□□□□ -1.35
COL9A1P20849 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC6.64□□□□□ -1.35
COL9A1P20849 AC113155.1-201ENST00000511141 769 ntBASIC6.64□□□□□ -1.35
COL9A1P20849 IGKV1D-22-201ENST00000518953 324 ntBASIC6.64□□□□□ -1.35
COL9A1P20849 AC087369.1-201ENST00000520775 996 ntBASIC6.64□□□□□ -1.35
COL9A1P20849 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC6.64□□□□□ -1.35
COL9A1P20849 AC027288.2-201ENST00000553028 243 ntBASIC6.64□□□□□ -1.35
COL9A1P20849 AC004381.1-201ENST00000565498 351 ntTSL 5 BASIC6.64□□□□□ -1.35
COL9A1P20849 MIR5692A1-201ENST00000580523 69 ntBASIC6.64□□□□□ -1.35
COL9A1P20849 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC6.64□□□□□ -1.35
COL9A1P20849 AC034229.6-201ENST00000623704 224 ntBASIC6.64□□□□□ -1.35
COL9A1P20849 RBM41-202ENST00000372487 2579 ntAPPRIS ALT1 TSL 2 BASIC6.64□□□□□ -1.35
COL9A1P20849 ZNF254-206ENST00000611359 3982 ntTSL 3 BASIC6.64□□□□□ -1.35
COL9A1P20849 ZMYM2-210ENST00000610343 10200 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
COL9A1P20849 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
COL9A1P20849 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC6.64□□□□□ -1.35
COL9A1P20849 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC6.64□□□□□ -1.35
COL9A1P20849 KIAA0895-201ENST00000297063 4153 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
COL9A1P20849 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC6.64□□□□□ -1.35
COL9A1P20849 SELP-203ENST00000367788 2427 ntAPPRIS ALT2 TSL 5 BASIC6.64□□□□□ -1.35
COL9A1P20849 DLG2-211ENST00000426717 5927 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
COL9A1P20849 FNDC7-201ENST00000370017 3332 ntAPPRIS P1 TSL 5 BASIC6.63□□□□□ -1.35
COL9A1P20849 JAM3-202ENST00000441717 3363 ntTSL 2 BASIC6.63□□□□□ -1.35
COL9A1P20849 PPP2R3A-201ENST00000264977 6795 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
COL9A1P20849 LINC02179-201ENST00000561523 3673 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
COL9A1P20849 CD163-201ENST00000359156 4268 ntAPPRIS P3 TSL 1 (best) BASIC6.63□□□□□ -1.35
COL9A1P20849 PMFBP1-202ENST00000355636 3501 ntAPPRIS ALT2 TSL 5 BASIC6.63□□□□□ -1.35
COL9A1P20849 Y_RNA.143-201ENST00000363520 106 ntBASIC6.63□□□□□ -1.35
COL9A1P20849 Y_RNA.292-201ENST00000364904 97 ntBASIC6.63□□□□□ -1.35
COL9A1P20849 Y_RNA.343-201ENST00000365354 112 ntBASIC6.63□□□□□ -1.35
COL9A1P20849 ERMARD-202ENST00000366772 2003 ntTSL 5 BASIC6.63□□□□□ -1.35
COL9A1P20849 SNORD20-201ENST00000384550 80 ntBASIC6.63□□□□□ -1.35
COL9A1P20849 MIR199B-201ENST00000384849 110 ntBASIC6.63□□□□□ -1.35
COL9A1P20849 MIR1286-201ENST00000408112 78 ntBASIC6.63□□□□□ -1.35
COL9A1P20849 RPL23AP27-201ENST00000415161 451 ntBASIC6.63□□□□□ -1.35
COL9A1P20849 RPS23P10-201ENST00000416185 486 ntBASIC6.63□□□□□ -1.35
COL9A1P20849 TMEM167AP1-201ENST00000423409 219 ntBASIC6.63□□□□□ -1.35
COL9A1P20849 MTCO1P5-201ENST00000433573 344 ntBASIC6.63□□□□□ -1.35
COL9A1P20849 AC127537.2-201ENST00000439258 465 ntBASIC6.63□□□□□ -1.35
COL9A1P20849 GAPDHP27-201ENST00000447427 1020 ntBASIC6.63□□□□□ -1.35
COL9A1P20849 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC6.63□□□□□ -1.35
COL9A1P20849 RPL30P10-201ENST00000488148 337 ntBASIC6.63□□□□□ -1.35
COL9A1P20849 RN7SL30P-201ENST00000488416 306 ntBASIC6.63□□□□□ -1.35
COL9A1P20849 RN7SL808P-201ENST00000496066 299 ntBASIC6.63□□□□□ -1.35
COL9A1P20849 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC6.63□□□□□ -1.35
COL9A1P20849 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
COL9A1P20849 PARD3-212ENST00000544292 2475 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
COL9A1P20849 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC6.63□□□□□ -1.35
COL9A1P20849 AC005951.2-201ENST00000576282 495 ntBASIC6.63□□□□□ -1.35
COL9A1P20849 SNORA70D-201ENST00000578836 135 ntBASIC6.63□□□□□ -1.35
COL9A1P20849 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC6.63□□□□□ -1.35
COL9A1P20849 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC6.63□□□□□ -1.35
COL9A1P20849 MIR3976-201ENST00000606807 139 ntBASIC6.63□□□□□ -1.35
COL9A1P20849 IGKV2OR2-10-201ENST00000613976 311 ntBASIC6.63□□□□□ -1.35
COL9A1P20849 CENPF-206ENST00000614578 528 ntTSL 5 BASIC6.63□□□□□ -1.35
COL9A1P20849 MTND1P7-201ENST00000632801 297 ntBASIC6.63□□□□□ -1.35
COL9A1P20849 OR13C1P-202ENST00000641378 2919 ntBASIC6.63□□□□□ -1.35
COL9A1P20849 DSCAM-203ENST00000617870 6176 ntTSL 5 BASIC6.63□□□□□ -1.35
COL9A1P20849 IL1RAP-202ENST00000317757 5413 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
COL9A1P20849 ATP1B4-203ENST00000539306 4644 ntTSL 2 BASIC6.63□□□□□ -1.35
COL9A1P20849 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC6.63□□□□□ -1.35
COL9A1P20849 CD46-203ENST00000354848 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC6.63□□□□□ -1.35
COL9A1P20849 DCP2-201ENST00000389063 8947 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
COL9A1P20849 ZFX-202ENST00000338565 2906 ntTSL 5 BASIC6.63□□□□□ -1.35
COL9A1P20849 FBXL13-201ENST00000313221 2744 ntTSL 2 BASIC6.63□□□□□ -1.35
COL9A1P20849 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC6.63□□□□□ -1.35
COL9A1P20849 ECHDC1-210ENST00000454859 2341 ntAPPRIS P3 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL9A1P20849 AC105105.2-201ENST00000590797 4521 ntTSL 2 BASIC6.62□□□□□ -1.35
COL9A1P20849 ZNF160-202ENST00000418871 4219 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL9A1P20849 PDE4B-207ENST00000480109 2037 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
COL9A1P20849 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC6.62□□□□□ -1.35
COL9A1P20849 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL9A1P20849 LINC00649-203ENST00000427447 9124 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
COL9A1P20849 SRCAP-201ENST00000262518 11754 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
COL9A1P20849 POLH-201ENST00000372226 3322 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
COL9A1P20849 ANK2-203ENST00000394537 6313 ntAPPRIS ALT2 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL9A1P20849 RPL14-201ENST00000338970 7072 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL9A1P20849 APOBEC4-201ENST00000308641 2650 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL9A1P20849 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL9A1P20849 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
COL9A1P20849 RNU6-1243P-201ENST00000364028 107 ntBASIC6.62□□□□□ -1.35
COL9A1P20849 RNU6-290P-201ENST00000365212 101 ntBASIC6.62□□□□□ -1.35
COL9A1P20849 RNU6-1293P-201ENST00000384077 107 ntBASIC6.62□□□□□ -1.35
COL9A1P20849 Y_RNA.602-201ENST00000410535 92 ntBASIC6.62□□□□□ -1.35
COL9A1P20849 RPL23AP36-201ENST00000413895 458 ntBASIC6.62□□□□□ -1.35
COL9A1P20849 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC6.62□□□□□ -1.35
COL9A1P20849 AC094019.1-201ENST00000434678 472 ntBASIC6.62□□□□□ -1.35
COL9A1P20849 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC6.62□□□□□ -1.35
COL9A1P20849 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC6.62□□□□□ -1.35
COL9A1P20849 AC133134.1-201ENST00000466800 359 ntBASIC6.62□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 106.9 ms