Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 UBDP1-202ENST00000457888 382 ntBASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 AC108941.1-201ENST00000502853 530 ntBASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 SNORA31.20-201ENST00000517111 133 ntBASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 AC107016.1-201ENST00000550463 337 ntBASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 SYF2P1-201ENST00000550658 413 ntBASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 SNORD39.3-201ENST00000584451 71 ntBASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 AC103881.1-201ENST00000603476 538 ntBASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 AC005000.2-201ENST00000605468 310 ntBASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 AC073968.1-201ENST00000618594 637 ntBASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 TMEM161BP1-201ENST00000457388 1457 ntBASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 AL031985.3-201ENST00000565390 2449 ntBASIC3.79□□□□□ -1.8
HDDC3Q8N4P3 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 RNU6-989P-201ENST00000362756 107 ntBASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 RNA5SP50-201ENST00000363731 107 ntBASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 RNA5SP51-201ENST00000364750 119 ntBASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 AC234772.1-201ENST00000377927 937 ntBASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 RNU6-328P-201ENST00000390887 106 ntBASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 OR4K6P-201ENST00000416478 897 ntBASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 SFR1P2-201ENST00000421841 730 ntBASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 AL158156.1-201ENST00000422509 473 ntBASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 MRPS18BP2-201ENST00000434310 759 ntBASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 AC096638.2-201ENST00000434965 711 ntBASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 AL136126.1-201ENST00000473603 402 ntBASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 MTCO3P35-201ENST00000485582 781 ntBASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 AC098799.1-201ENST00000504752 800 ntBASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 AC091860.1-201ENST00000505723 432 ntBASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 RNU5A-7P-201ENST00000515979 116 ntBASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 ZNF705CP-201ENST00000530515 889 ntBASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 OR5B10P-201ENST00000532869 642 ntBASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 AC006960.3-201ENST00000561845 705 ntBASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 MIR3922-201ENST00000585192 84 ntBASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 SNORA62.6-201ENST00000606322 83 ntBASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 SCARNA15.3-201ENST00000626315 122 ntBASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 SCARNA4.1-201ENST00000628597 123 ntBASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 PRO1804-201ENST00000623780 2050 ntBASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC3.78□□□□□ -1.8
HDDC3Q8N4P3 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.81
HDDC3Q8N4P3 AC130650.2-201ENST00000618736 2403 ntBASIC3.78□□□□□ -1.81
HDDC3Q8N4P3 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 AC004925.1-201ENST00000624256 2706 ntBASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 RNA5SP258-201ENST00000362750 119 ntBASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 RNU6-207P-201ENST00000384137 107 ntBASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 RPL7P60-201ENST00000397636 735 ntBASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 AP000567.1-201ENST00000406413 156 ntBASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 OFD1P12Y-201ENST00000427963 1207 ntBASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 OFD1P13Y-201ENST00000431179 1232 ntBASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 RPS7P2-201ENST00000435134 607 ntBASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 SNORA71B-202ENST00000439232 272 ntBASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 RPL23AP16-201ENST00000441715 421 ntBASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 NPM1P13-201ENST00000452663 865 ntBASIC3.77□□□□□ -1.81
HDDC3Q8N4P3 HMGN2P16-201ENST00000456802 261 ntBASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 138.9 ms