Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC4.24□□□□□ -1.73
USP41Q3LFD5 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC4.24□□□□□ -1.73
USP41Q3LFD5 AC010587.2-201ENST00000511727 448 ntBASIC4.24□□□□□ -1.73
USP41Q3LFD5 AC018797.3-201ENST00000513388 1241 ntBASIC4.24□□□□□ -1.73
USP41Q3LFD5 RNU6-1261P-201ENST00000517194 104 ntBASIC4.24□□□□□ -1.73
USP41Q3LFD5 NDUFA5P2-201ENST00000519723 344 ntBASIC4.24□□□□□ -1.73
USP41Q3LFD5 AP003461.1-201ENST00000528866 78 ntBASIC4.24□□□□□ -1.73
USP41Q3LFD5 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC4.24□□□□□ -1.73
USP41Q3LFD5 MRPS36P5-201ENST00000551909 298 ntBASIC4.24□□□□□ -1.73
USP41Q3LFD5 AC074029.1-201ENST00000552531 1044 ntBASIC4.24□□□□□ -1.73
USP41Q3LFD5 CASC16-202ENST00000563844 610 ntTSL 3 BASIC4.24□□□□□ -1.73
USP41Q3LFD5 OR4K7P-201ENST00000580232 945 ntBASIC4.24□□□□□ -1.73
USP41Q3LFD5 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC4.24□□□□□ -1.73
USP41Q3LFD5 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.24□□□□□ -1.73
USP41Q3LFD5 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC4.24□□□□□ -1.73
USP41Q3LFD5 AL031281.1-201ENST00000604049 488 ntBASIC4.24□□□□□ -1.73
USP41Q3LFD5 AC009220.3-201ENST00000604318 586 ntBASIC4.24□□□□□ -1.73
USP41Q3LFD5 DPRXP5-201ENST00000604662 539 ntBASIC4.24□□□□□ -1.73
USP41Q3LFD5 AL121772.2-201ENST00000614331 297 ntBASIC4.24□□□□□ -1.73
USP41Q3LFD5 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC4.24□□□□□ -1.73
USP41Q3LFD5 MTND2P41-201ENST00000637599 773 ntBASIC4.24□□□□□ -1.73
USP41Q3LFD5 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
USP41Q3LFD5 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.24□□□□□ -1.73
USP41Q3LFD5 AL139811.1-201ENST00000424779 2299 ntBASIC4.24□□□□□ -1.73
USP41Q3LFD5 AC005539.1-201ENST00000443768 1479 ntBASIC4.24□□□□□ -1.73
USP41Q3LFD5 AP002001.2-201ENST00000529025 1469 ntBASIC4.24□□□□□ -1.73
USP41Q3LFD5 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
USP41Q3LFD5 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.23□□□□□ -1.73
USP41Q3LFD5 Z73965.1-201ENST00000623412 2297 ntBASIC4.23□□□□□ -1.73
USP41Q3LFD5 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
USP41Q3LFD5 Y_RNA.25-201ENST00000362528 102 ntBASIC4.23□□□□□ -1.73
USP41Q3LFD5 RNU6-251P-201ENST00000363235 104 ntBASIC4.23□□□□□ -1.73
USP41Q3LFD5 CD2-201ENST00000369477 478 ntTSL 2 BASIC4.23□□□□□ -1.73
USP41Q3LFD5 RNU6-921P-201ENST00000384361 107 ntBASIC4.23□□□□□ -1.73
USP41Q3LFD5 MIR449B-201ENST00000384995 97 ntBASIC4.23□□□□□ -1.73
USP41Q3LFD5 PVALB-202ENST00000404171 422 ntTSL 2 BASIC4.23□□□□□ -1.73
USP41Q3LFD5 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC4.23□□□□□ -1.73
USP41Q3LFD5 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC4.23□□□□□ -1.73
USP41Q3LFD5 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC4.23□□□□□ -1.73
USP41Q3LFD5 Z97055.1-201ENST00000419730 712 ntBASIC4.23□□□□□ -1.73
USP41Q3LFD5 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC4.23□□□□□ -1.73
USP41Q3LFD5 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC4.23□□□□□ -1.73
USP41Q3LFD5 UBE2V1P1-201ENST00000430836 445 ntBASIC4.23□□□□□ -1.73
USP41Q3LFD5 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC4.23□□□□□ -1.73
USP41Q3LFD5 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC4.23□□□□□ -1.73
USP41Q3LFD5 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
USP41Q3LFD5 RPS26P56-201ENST00000444468 240 ntBASIC4.23□□□□□ -1.73
USP41Q3LFD5 RPL7P18-201ENST00000478965 734 ntBASIC4.23□□□□□ -1.73
USP41Q3LFD5 PPIAP15-201ENST00000479662 484 ntBASIC4.23□□□□□ -1.73
USP41Q3LFD5 ACTR3P3-201ENST00000480448 893 ntBASIC4.23□□□□□ -1.73
USP41Q3LFD5 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.23□□□□□ -1.73
USP41Q3LFD5 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC4.23□□□□□ -1.73
USP41Q3LFD5 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.23□□□□□ -1.73
USP41Q3LFD5 RN7SKP82-201ENST00000516786 223 ntBASIC4.23□□□□□ -1.73
USP41Q3LFD5 AC027309.2-201ENST00000520566 192 ntBASIC4.23□□□□□ -1.73
USP41Q3LFD5 ARL2BPP5-201ENST00000523141 481 ntBASIC4.23□□□□□ -1.73
USP41Q3LFD5 ERP27-202ENST00000540097 993 ntTSL 2 BASIC4.23□□□□□ -1.73
USP41Q3LFD5 YPEL5P3-201ENST00000547227 352 ntBASIC4.23□□□□□ -1.73
USP41Q3LFD5 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC4.23□□□□□ -1.73
USP41Q3LFD5 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.23□□□□□ -1.73
USP41Q3LFD5 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.23□□□□□ -1.73
USP41Q3LFD5 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC4.23□□□□□ -1.73
USP41Q3LFD5 Z99129.2-201ENST00000619967 314 ntBASIC4.23□□□□□ -1.73
USP41Q3LFD5 AL139089.1-201ENST00000620372 975 ntBASIC4.23□□□□□ -1.73
USP41Q3LFD5 AC000123.2-201ENST00000623124 461 ntBASIC4.23□□□□□ -1.73
USP41Q3LFD5 AP006248.2-201ENST00000623309 592 ntBASIC4.23□□□□□ -1.73
USP41Q3LFD5 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC4.23□□□□□ -1.73
USP41Q3LFD5 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
USP41Q3LFD5 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
USP41Q3LFD5 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
USP41Q3LFD5 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
USP41Q3LFD5 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.23□□□□□ -1.73
USP41Q3LFD5 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC4.23□□□□□ -1.73
USP41Q3LFD5 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.23□□□□□ -1.73
USP41Q3LFD5 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
USP41Q3LFD5 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
USP41Q3LFD5 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.22□□□□□ -1.73
USP41Q3LFD5 FER-202ENST00000438717 1531 ntTSL 2 BASIC4.22□□□□□ -1.73
USP41Q3LFD5 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
USP41Q3LFD5 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC4.22□□□□□ -1.73
USP41Q3LFD5 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.22□□□□□ -1.73
USP41Q3LFD5 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.22□□□□□ -1.73
USP41Q3LFD5 RNA5SP124-201ENST00000362739 110 ntBASIC4.22□□□□□ -1.73
USP41Q3LFD5 RNA5SP322-201ENST00000363617 119 ntBASIC4.22□□□□□ -1.73
USP41Q3LFD5 RNA5SP399-201ENST00000364003 117 ntBASIC4.22□□□□□ -1.73
USP41Q3LFD5 5S_rRNA.1-201ENST00000364415 116 ntBASIC4.22□□□□□ -1.73
USP41Q3LFD5 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC4.22□□□□□ -1.73
USP41Q3LFD5 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC4.22□□□□□ -1.73
USP41Q3LFD5 RAB9AP3-201ENST00000412737 573 ntBASIC4.22□□□□□ -1.73
USP41Q3LFD5 AC107081.1-201ENST00000414975 361 ntBASIC4.22□□□□□ -1.73
USP41Q3LFD5 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
USP41Q3LFD5 RPS6P15-201ENST00000431996 751 ntBASIC4.22□□□□□ -1.73
USP41Q3LFD5 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
USP41Q3LFD5 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC4.22□□□□□ -1.73
USP41Q3LFD5 RAB9AP1-201ENST00000449393 573 ntBASIC4.22□□□□□ -1.73
USP41Q3LFD5 ANK3-207ENST00000460468 677 ntTSL 3 BASIC4.22□□□□□ -1.73
USP41Q3LFD5 RPL7L1P8-201ENST00000469911 741 ntBASIC4.22□□□□□ -1.73
USP41Q3LFD5 AP000893.1-201ENST00000474462 794 ntBASIC4.22□□□□□ -1.73
USP41Q3LFD5 OR4G11P-201ENST00000492842 939 ntBASIC4.22□□□□□ -1.73
USP41Q3LFD5 HMGB1P21-201ENST00000502313 581 ntBASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 122.7 ms