Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC2.83□□□□□ -1.96
FOXA1P55317 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC2.83□□□□□ -1.96
FOXA1P55317 BX322635.1-201ENST00000605804 496 ntBASIC2.83□□□□□ -1.96
FOXA1P55317 AL159169.3-201ENST00000608871 561 ntBASIC2.83□□□□□ -1.96
FOXA1P55317 AC123768.4-201ENST00000616244 701 ntBASIC2.83□□□□□ -1.96
FOXA1P55317 AL355493.4-201ENST00000618530 292 ntBASIC2.83□□□□□ -1.96
FOXA1P55317 AC116563.2-201ENST00000624751 535 ntBASIC2.83□□□□□ -1.96
FOXA1P55317 AC084035.1-201ENST00000634543 607 ntBASIC2.83□□□□□ -1.96
FOXA1P55317 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC2.83□□□□□ -1.96
FOXA1P55317 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
FOXA1P55317 ASNSP3-201ENST00000451989 1306 ntBASIC2.83□□□□□ -1.96
FOXA1P55317 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC2.83□□□□□ -1.96
FOXA1P55317 AC118273.1-201ENST00000525324 3006 ntBASIC2.83□□□□□ -1.96
FOXA1P55317 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.82□□□□□ -1.96
FOXA1P55317 AC138393.1-206ENST00000540997 1886 ntBASIC2.82□□□□□ -1.96
FOXA1P55317 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC2.82□□□□□ -1.96
FOXA1P55317 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
FOXA1P55317 RPL9P7-201ENST00000330965 580 ntBASIC2.82□□□□□ -1.96
FOXA1P55317 RNA5SP72-201ENST00000364442 117 ntBASIC2.82□□□□□ -1.96
FOXA1P55317 RNU6-185P-201ENST00000384421 107 ntBASIC2.82□□□□□ -1.96
FOXA1P55317 AL590004.2-201ENST00000404787 371 ntBASIC2.82□□□□□ -1.96
FOXA1P55317 AL589655.1-201ENST00000405398 482 ntBASIC2.82□□□□□ -1.96
FOXA1P55317 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC2.82□□□□□ -1.96
FOXA1P55317 AL158156.1-201ENST00000422509 473 ntBASIC2.82□□□□□ -1.96
FOXA1P55317 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC2.82□□□□□ -1.96
FOXA1P55317 AL390023.1-201ENST00000428836 262 ntBASIC2.82□□□□□ -1.96
FOXA1P55317 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC2.82□□□□□ -1.96
FOXA1P55317 AL031663.1-201ENST00000437445 219 ntBASIC2.82□□□□□ -1.96
FOXA1P55317 CBX1P4-201ENST00000439415 457 ntBASIC2.82□□□□□ -1.96
FOXA1P55317 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC2.82□□□□□ -1.96
FOXA1P55317 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC2.82□□□□□ -1.96
FOXA1P55317 HMGB1P5-202ENST00000451497 985 ntBASIC2.82□□□□□ -1.96
FOXA1P55317 HGF-207ENST00000453018 721 ntTSL 3 BASIC2.82□□□□□ -1.96
FOXA1P55317 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC2.82□□□□□ -1.96
FOXA1P55317 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC2.82□□□□□ -1.96
FOXA1P55317 AC074250.1-201ENST00000511117 192 ntBASIC2.82□□□□□ -1.96
FOXA1P55317 SNORA48.9-201ENST00000516419 162 ntBASIC2.82□□□□□ -1.96
FOXA1P55317 RN7SKP272-201ENST00000516988 232 ntBASIC2.82□□□□□ -1.96
FOXA1P55317 HMGB1P46-201ENST00000520062 610 ntBASIC2.82□□□□□ -1.96
FOXA1P55317 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC2.82□□□□□ -1.96
FOXA1P55317 AP001207.1-201ENST00000524051 481 ntBASIC2.82□□□□□ -1.96
FOXA1P55317 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC2.82□□□□□ -1.96
FOXA1P55317 MIR548Y-201ENST00000582739 110 ntBASIC2.82□□□□□ -1.96
FOXA1P55317 NF1P5-201ENST00000588287 448 ntBASIC2.82□□□□□ -1.96
FOXA1P55317 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC2.82□□□□□ -1.96
FOXA1P55317 AC015726.3-201ENST00000624501 418 ntBASIC2.82□□□□□ -1.96
FOXA1P55317 AL672296.1-201ENST00000427780 2158 ntBASIC2.82□□□□□ -1.96
FOXA1P55317 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC2.82□□□□□ -1.96
FOXA1P55317 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC2.82□□□□□ -1.96
FOXA1P55317 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
FOXA1P55317 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
FOXA1P55317 RNU6-525P-201ENST00000363685 104 ntBASIC2.81□□□□□ -1.96
FOXA1P55317 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
FOXA1P55317 U3.19-201ENST00000390893 196 ntBASIC2.81□□□□□ -1.96
FOXA1P55317 GSTA8P-201ENST00000404253 637 ntBASIC2.81□□□□□ -1.96
FOXA1P55317 KRR1P1-201ENST00000419430 803 ntBASIC2.81□□□□□ -1.96
FOXA1P55317 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC2.81□□□□□ -1.96
FOXA1P55317 VDAC1P3-201ENST00000434069 851 ntBASIC2.81□□□□□ -1.96
FOXA1P55317 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC2.81□□□□□ -1.96
FOXA1P55317 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC2.81□□□□□ -1.96
FOXA1P55317 TRAPPC13P1-201ENST00000435991 1062 ntBASIC2.81□□□□□ -1.96
FOXA1P55317 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
FOXA1P55317 GAPDHP27-201ENST00000447427 1020 ntBASIC2.81□□□□□ -1.96
FOXA1P55317 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC2.81□□□□□ -1.96
FOXA1P55317 DYNLL1P6-201ENST00000503440 264 ntBASIC2.81□□□□□ -1.96
FOXA1P55317 DSTNP2-201ENST00000504533 515 ntBASIC2.81□□□□□ -1.96
FOXA1P55317 RNA5SP76-201ENST00000516277 87 ntBASIC2.81□□□□□ -1.96
FOXA1P55317 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC2.81□□□□□ -1.96
FOXA1P55317 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC2.81□□□□□ -1.96
FOXA1P55317 AL049870.4-201ENST00000555741 486 ntBASIC2.81□□□□□ -1.96
FOXA1P55317 MIR3200-201ENST00000580767 85 ntBASIC2.81□□□□□ -1.96
FOXA1P55317 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC2.81□□□□□ -1.96
FOXA1P55317 AC022509.4-201ENST00000621404 572 ntBASIC2.81□□□□□ -1.96
FOXA1P55317 AC104820.1-201ENST00000624183 307 ntBASIC2.81□□□□□ -1.96
FOXA1P55317 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC2.81□□□□□ -1.96
FOXA1P55317 MAPK10-362ENST00000641864 4484 ntBASIC2.81□□□□□ -1.96
FOXA1P55317 XPOTP1-201ENST00000443317 2398 ntBASIC2.81□□□□□ -1.96
FOXA1P55317 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.81□□□□□ -1.96
FOXA1P55317 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC2.8□□□□□ -1.96
FOXA1P55317 AC073346.2-201ENST00000624724 2058 ntBASIC2.8□□□□□ -1.96
FOXA1P55317 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC2.8□□□□□ -1.96
FOXA1P55317 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC2.8□□□□□ -1.96
FOXA1P55317 AC108206.1-201ENST00000570186 4159 ntBASIC2.8□□□□□ -1.96
FOXA1P55317 OR5BR1P-201ENST00000524992 1330 ntBASIC2.8□□□□□ -1.96
FOXA1P55317 MIR491-201ENST00000384877 84 ntBASIC2.8□□□□□ -1.96
FOXA1P55317 MIR591-201ENST00000385290 95 ntBASIC2.8□□□□□ -1.96
FOXA1P55317 Z86062.1-201ENST00000406773 777 ntBASIC2.8□□□□□ -1.96
FOXA1P55317 AC008280.1-201ENST00000418851 412 ntBASIC2.8□□□□□ -1.96
FOXA1P55317 RPL30P3-201ENST00000424262 333 ntBASIC2.8□□□□□ -1.96
FOXA1P55317 AL160175.1-201ENST00000428124 247 ntBASIC2.8□□□□□ -1.96
FOXA1P55317 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC2.8□□□□□ -1.96
FOXA1P55317 MTND2P21-201ENST00000436242 1042 ntBASIC2.8□□□□□ -1.96
FOXA1P55317 AC114878.1-201ENST00000441166 358 ntBASIC2.8□□□□□ -1.96
FOXA1P55317 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.8□□□□□ -1.96
FOXA1P55317 AL592437.1-201ENST00000443781 492 ntBASIC2.8□□□□□ -1.96
FOXA1P55317 AC104978.1-201ENST00000449387 391 ntBASIC2.8□□□□□ -1.96
FOXA1P55317 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC2.8□□□□□ -1.96
FOXA1P55317 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC2.8□□□□□ -1.96
FOXA1P55317 snoU13.24-201ENST00000458998 104 ntBASIC2.8□□□□□ -1.96
FOXA1P55317 SNORD108-201ENST00000459332 71 ntBASIC2.8□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 130.6 ms