Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.27□□□□□ -1.89
COL4A4P53420 AC015871.2-201ENST00000603605 948 ntBASIC3.27□□□□□ -1.89
COL4A4P53420 AC087683.2-201ENST00000611384 326 ntBASIC3.27□□□□□ -1.89
COL4A4P53420 AL122125.1-201ENST00000616999 600 ntBASIC3.27□□□□□ -1.89
COL4A4P53420 U6.48-201ENST00000618523 106 ntBASIC3.27□□□□□ -1.89
COL4A4P53420 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
COL4A4P53420 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.27□□□□□ -1.89
COL4A4P53420 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
COL4A4P53420 RPL7P26-201ENST00000333817 754 ntBASIC3.27□□□□□ -1.89
COL4A4P53420 SNORD56.3-201ENST00000363507 71 ntBASIC3.27□□□□□ -1.89
COL4A4P53420 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
COL4A4P53420 NPM1P11-201ENST00000417106 855 ntBASIC3.27□□□□□ -1.89
COL4A4P53420 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC3.27□□□□□ -1.89
COL4A4P53420 AC114973.1-201ENST00000429057 632 ntBASIC3.27□□□□□ -1.89
COL4A4P53420 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC3.27□□□□□ -1.89
COL4A4P53420 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
COL4A4P53420 Z77249.1-201ENST00000444622 1175 ntBASIC3.27□□□□□ -1.89
COL4A4P53420 MTATP6P14-201ENST00000455189 673 ntBASIC3.27□□□□□ -1.89
COL4A4P53420 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.27□□□□□ -1.89
COL4A4P53420 AL136097.1-201ENST00000456945 913 ntBASIC3.27□□□□□ -1.89
COL4A4P53420 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC3.27□□□□□ -1.89
COL4A4P53420 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC3.27□□□□□ -1.89
COL4A4P53420 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC3.27□□□□□ -1.89
COL4A4P53420 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC3.27□□□□□ -1.89
COL4A4P53420 AC093510.2-201ENST00000562820 896 ntBASIC3.27□□□□□ -1.89
COL4A4P53420 AC006116.7-201ENST00000590141 756 ntBASIC3.27□□□□□ -1.89
COL4A4P53420 AP001033.2-201ENST00000609701 1003 ntBASIC3.27□□□□□ -1.89
COL4A4P53420 AP003399.1-201ENST00000637534 361 ntBASIC3.27□□□□□ -1.89
COL4A4P53420 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
COL4A4P53420 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
COL4A4P53420 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
COL4A4P53420 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
COL4A4P53420 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC3.26□□□□□ -1.89
COL4A4P53420 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
COL4A4P53420 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
COL4A4P53420 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.26□□□□□ -1.89
COL4A4P53420 RNU4-23P-201ENST00000362839 140 ntBASIC3.26□□□□□ -1.89
COL4A4P53420 RN7SKP220-201ENST00000410611 288 ntBASIC3.26□□□□□ -1.89
COL4A4P53420 AC106883.1-201ENST00000418805 562 ntBASIC3.26□□□□□ -1.89
COL4A4P53420 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC3.26□□□□□ -1.89
COL4A4P53420 Z93242.1-201ENST00000427102 353 ntBASIC3.26□□□□□ -1.89
COL4A4P53420 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC3.26□□□□□ -1.89
COL4A4P53420 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC3.26□□□□□ -1.89
COL4A4P53420 snoU109.3-201ENST00000459477 145 ntBASIC3.26□□□□□ -1.89
COL4A4P53420 APOA2-205ENST00000468465 421 ntTSL 2 BASIC3.26□□□□□ -1.89
COL4A4P53420 AC117522.2-201ENST00000510049 657 ntBASIC3.26□□□□□ -1.89
COL4A4P53420 ATP5F1P5-201ENST00000526403 760 ntBASIC3.26□□□□□ -1.89
COL4A4P53420 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
COL4A4P53420 MIR4435-1-201ENST00000582552 80 ntBASIC3.26□□□□□ -1.89
COL4A4P53420 BNIP3P24-201ENST00000593398 557 ntBASIC3.26□□□□□ -1.89
COL4A4P53420 ZNF92P3-201ENST00000596594 954 ntBASIC3.26□□□□□ -1.89
COL4A4P53420 Z94722.1-201ENST00000604328 474 ntBASIC3.26□□□□□ -1.89
COL4A4P53420 AC073111.2-201ENST00000605657 1075 ntBASIC3.26□□□□□ -1.89
COL4A4P53420 AC135803.1-201ENST00000608748 565 ntBASIC3.26□□□□□ -1.89
COL4A4P53420 AL096803.3-201ENST00000609032 532 ntBASIC3.26□□□□□ -1.89
COL4A4P53420 AC015813.6-201ENST00000624409 5808 ntBASIC3.26□□□□□ -1.89
COL4A4P53420 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
COL4A4P53420 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
COL4A4P53420 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
COL4A4P53420 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC3.26□□□□□ -1.89
COL4A4P53420 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
COL4A4P53420 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC3.25□□□□□ -1.89
COL4A4P53420 U3.11-201ENST00000364476 212 ntBASIC3.25□□□□□ -1.89
COL4A4P53420 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC3.25□□□□□ -1.89
COL4A4P53420 AL583834.1-201ENST00000406943 343 ntBASIC3.25□□□□□ -1.89
COL4A4P53420 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC3.25□□□□□ -1.89
COL4A4P53420 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC3.25□□□□□ -1.89
COL4A4P53420 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC3.25□□□□□ -1.89
COL4A4P53420 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.25□□□□□ -1.89
COL4A4P53420 AC112496.1-201ENST00000497961 562 ntTSL 5 BASIC3.25□□□□□ -1.89
COL4A4P53420 AC016550.1-201ENST00000505348 785 ntBASIC3.25□□□□□ -1.89
COL4A4P53420 HIGD1AP13-201ENST00000509878 289 ntBASIC3.25□□□□□ -1.89
COL4A4P53420 MTND1P22-201ENST00000510572 951 ntBASIC3.25□□□□□ -1.89
COL4A4P53420 C1GALT1P2-201ENST00000510813 1104 ntBASIC3.25□□□□□ -1.89
COL4A4P53420 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC3.25□□□□□ -1.89
COL4A4P53420 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC3.25□□□□□ -1.89
COL4A4P53420 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC3.25□□□□□ -1.89
COL4A4P53420 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.25□□□□□ -1.89
COL4A4P53420 OR4C2P-201ENST00000530855 1064 ntBASIC3.25□□□□□ -1.89
COL4A4P53420 MTND2P17-201ENST00000550281 688 ntBASIC3.25□□□□□ -1.89
COL4A4P53420 LINC00557-201ENST00000563184 1279 ntBASIC3.25□□□□□ -1.89
COL4A4P53420 AC234778.2-201ENST00000566241 354 ntBASIC3.25□□□□□ -1.89
COL4A4P53420 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC3.25□□□□□ -1.89
COL4A4P53420 AC133794.1-201ENST00000602731 914 ntBASIC3.25□□□□□ -1.89
COL4A4P53420 AC024153.1-201ENST00000603103 365 ntBASIC3.25□□□□□ -1.89
COL4A4P53420 uc_338.1-201ENST00000612113 180 ntBASIC3.25□□□□□ -1.89
COL4A4P53420 AC013470.4-201ENST00000619978 986 ntBASIC3.25□□□□□ -1.89
COL4A4P53420 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC3.25□□□□□ -1.89
COL4A4P53420 AP000943.4-201ENST00000622912 357 ntBASIC3.25□□□□□ -1.89
COL4A4P53420 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC3.25□□□□□ -1.89
COL4A4P53420 MIR622-201ENST00000638396 96 ntBASIC3.25□□□□□ -1.89
COL4A4P53420 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
COL4A4P53420 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
COL4A4P53420 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC3.25□□□□□ -1.89
COL4A4P53420 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
COL4A4P53420 Y_RNA.238-201ENST00000364441 102 ntBASIC3.24□□□□□ -1.89
COL4A4P53420 MTCO2P31-201ENST00000402702 684 ntBASIC3.24□□□□□ -1.89
COL4A4P53420 MTND2P16-201ENST00000419987 799 ntBASIC3.24□□□□□ -1.89
COL4A4P53420 MTCO2P1-201ENST00000424648 477 ntBASIC3.24□□□□□ -1.89
COL4A4P53420 AC092648.1-201ENST00000425870 423 ntBASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 93.4 ms