Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 AC010615.3-201ENST00000597319 394 ntBASIC3.39□□□□□ -1.87
CCDC112Q8NEF3 AC016877.3-201ENST00000606778 504 ntBASIC3.39□□□□□ -1.87
CCDC112Q8NEF3 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC3.39□□□□□ -1.87
CCDC112Q8NEF3 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
CCDC112Q8NEF3 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.39□□□□□ -1.87
CCDC112Q8NEF3 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
CCDC112Q8NEF3 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.39□□□□□ -1.87
CCDC112Q8NEF3 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CCDC112Q8NEF3 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CCDC112Q8NEF3 AL157700.1-201ENST00000561973 1432 ntBASIC3.38□□□□□ -1.87
CCDC112Q8NEF3 U8.9-201ENST00000365667 134 ntBASIC3.38□□□□□ -1.87
CCDC112Q8NEF3 AC110754.1-201ENST00000399740 601 ntBASIC3.38□□□□□ -1.87
CCDC112Q8NEF3 AP000567.1-201ENST00000406413 156 ntBASIC3.38□□□□□ -1.87
CCDC112Q8NEF3 RNA5SP120-201ENST00000410900 112 ntBASIC3.38□□□□□ -1.87
CCDC112Q8NEF3 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.38□□□□□ -1.87
CCDC112Q8NEF3 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC3.38□□□□□ -1.87
CCDC112Q8NEF3 AL590103.1-201ENST00000434488 307 ntBASIC3.38□□□□□ -1.87
CCDC112Q8NEF3 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC3.38□□□□□ -1.87
CCDC112Q8NEF3 CYCSP32-201ENST00000440548 321 ntBASIC3.38□□□□□ -1.87
CCDC112Q8NEF3 AL662791.1-201ENST00000441992 928 ntBASIC3.38□□□□□ -1.87
CCDC112Q8NEF3 MTND2P8-201ENST00000450555 1025 ntBASIC3.38□□□□□ -1.87
CCDC112Q8NEF3 GSTA11P-201ENST00000452866 669 ntBASIC3.38□□□□□ -1.87
CCDC112Q8NEF3 BX510359.1-201ENST00000456973 237 ntBASIC3.38□□□□□ -1.87
CCDC112Q8NEF3 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC3.38□□□□□ -1.87
CCDC112Q8NEF3 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.38□□□□□ -1.87
CCDC112Q8NEF3 AC090071.1-201ENST00000507713 644 ntBASIC3.38□□□□□ -1.87
CCDC112Q8NEF3 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC3.38□□□□□ -1.87
CCDC112Q8NEF3 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC3.38□□□□□ -1.87
CCDC112Q8NEF3 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC3.38□□□□□ -1.87
CCDC112Q8NEF3 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC3.38□□□□□ -1.87
CCDC112Q8NEF3 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.38□□□□□ -1.87
CCDC112Q8NEF3 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.38□□□□□ -1.87
CCDC112Q8NEF3 AC023043.3-201ENST00000593113 385 ntBASIC3.38□□□□□ -1.87
CCDC112Q8NEF3 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC3.38□□□□□ -1.87
CCDC112Q8NEF3 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
CCDC112Q8NEF3 AL627309.6-201ENST00000606857 840 ntBASIC3.38□□□□□ -1.87
CCDC112Q8NEF3 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
CCDC112Q8NEF3 MIR3651-201ENST00000630427 90 ntBASIC3.38□□□□□ -1.87
CCDC112Q8NEF3 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
CCDC112Q8NEF3 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC3.38□□□□□ -1.87
CCDC112Q8NEF3 Z83843.1-201ENST00000604070 3685 ntBASIC3.38□□□□□ -1.87
CCDC112Q8NEF3 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 RNA5SP189-201ENST00000364920 115 ntBASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 MIR634-201ENST00000385208 97 ntBASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 DSCR4-IT1-201ENST00000417138 424 ntTSL 5 BASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 AJ239321.1-201ENST00000424255 564 ntBASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 RPL21P110-201ENST00000433345 446 ntBASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 AL031663.1-201ENST00000437445 219 ntBASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 AC108734.1-201ENST00000439549 399 ntBASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 AL591503.2-201ENST00000442314 1005 ntBASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 RPL39P40-201ENST00000445481 146 ntBASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 RPL31P53-201ENST00000457065 348 ntBASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 RPL21P41-201ENST00000459863 264 ntBASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 RPL5P24-201ENST00000463742 885 ntBASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 RN7SL20P-201ENST00000488827 297 ntBASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 SNORD116-30-201ENST00000516468 85 ntBASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 RNU4-60P-201ENST00000517239 135 ntBASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 MTCO3P13-201ENST00000577757 781 ntBASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 AL162713.1-201ENST00000604480 262 ntBASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 AC112503.1-201ENST00000608436 391 ntBASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 AC004832.5-201ENST00000608677 401 ntBASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 OR2BH1P-201ENST00000608850 864 ntBASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 AC005156.1-201ENST00000613371 573 ntBASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 AP005212.4-201ENST00000614206 710 ntBASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.37□□□□□ -1.87
CCDC112Q8NEF3 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.36□□□□□ -1.87
CCDC112Q8NEF3 ZNF33CP-201ENST00000432492 2030 ntBASIC3.36□□□□□ -1.87
CCDC112Q8NEF3 AL355596.1-201ENST00000565399 3996 ntBASIC3.36□□□□□ -1.87
CCDC112Q8NEF3 OR1S2-201ENST00000302592 978 ntBASIC3.36□□□□□ -1.87
CCDC112Q8NEF3 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.36□□□□□ -1.87
CCDC112Q8NEF3 NDUFB4P4-201ENST00000404822 243 ntBASIC3.36□□□□□ -1.87
CCDC112Q8NEF3 RNA5SP129-201ENST00000410276 118 ntBASIC3.36□□□□□ -1.87
CCDC112Q8NEF3 HMGN1P24-201ENST00000412282 298 ntBASIC3.36□□□□□ -1.87
CCDC112Q8NEF3 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.36□□□□□ -1.87
CCDC112Q8NEF3 AC006028.1-201ENST00000438379 402 ntBASIC3.36□□□□□ -1.87
CCDC112Q8NEF3 AL592437.1-201ENST00000443781 492 ntBASIC3.36□□□□□ -1.87
CCDC112Q8NEF3 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.36□□□□□ -1.87
CCDC112Q8NEF3 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC3.36□□□□□ -1.87
CCDC112Q8NEF3 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC3.36□□□□□ -1.87
CCDC112Q8NEF3 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms