Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC2.68□□□□□ -1.98
CHD3Q12873 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC2.68□□□□□ -1.98
CHD3Q12873 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC2.68□□□□□ -1.98
CHD3Q12873 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC2.68□□□□□ -1.98
CHD3Q12873 LRRC77P-213ENST00000637727 880 ntBASIC2.68□□□□□ -1.98
CHD3Q12873 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC2.67□□□□□ -1.98
CHD3Q12873 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC2.67□□□□□ -1.98
CHD3Q12873 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
CHD3Q12873 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC2.67□□□□□ -1.98
CHD3Q12873 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC2.67□□□□□ -1.98
CHD3Q12873 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC2.67□□□□□ -1.98
CHD3Q12873 NUCB2-202ENST00000458064 1279 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
CHD3Q12873 AC091179.1-201ENST00000461606 579 ntBASIC2.67□□□□□ -1.98
CHD3Q12873 RPL9P32-201ENST00000464118 620 ntBASIC2.67□□□□□ -1.98
CHD3Q12873 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC2.67□□□□□ -1.98
CHD3Q12873 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.67□□□□□ -1.98
CHD3Q12873 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC2.67□□□□□ -1.98
CHD3Q12873 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC2.67□□□□□ -1.98
CHD3Q12873 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC2.67□□□□□ -1.98
CHD3Q12873 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC2.67□□□□□ -1.98
CHD3Q12873 AC005156.1-201ENST00000613371 573 ntBASIC2.67□□□□□ -1.98
CHD3Q12873 AL356490.1-201ENST00000623079 479 ntBASIC2.67□□□□□ -1.98
CHD3Q12873 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC2.67□□□□□ -1.98
CHD3Q12873 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC2.67□□□□□ -1.98
CHD3Q12873 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC2.66□□□□□ -1.98
CHD3Q12873 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
CHD3Q12873 SNORA31-201ENST00000362607 130 ntBASIC2.66□□□□□ -1.98
CHD3Q12873 RNA5SP383-201ENST00000362934 120 ntBASIC2.66□□□□□ -1.98
CHD3Q12873 RPS24P13-201ENST00000442520 397 ntBASIC2.66□□□□□ -1.98
CHD3Q12873 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.66□□□□□ -1.98
CHD3Q12873 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC2.66□□□□□ -1.98
CHD3Q12873 AC015917.1-201ENST00000579654 510 ntBASIC2.66□□□□□ -1.98
CHD3Q12873 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC2.66□□□□□ -1.98
CHD3Q12873 AK6-205ENST00000618980 483 ntTSL 2 BASIC2.66□□□□□ -1.98
CHD3Q12873 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC2.66□□□□□ -1.98
CHD3Q12873 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
CHD3Q12873 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC2.66□□□□□ -1.98
CHD3Q12873 FAM35CP-201ENST00000554755 2470 ntBASIC2.66□□□□□ -1.98
CHD3Q12873 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC2.66□□□□□ -1.98
CHD3Q12873 AL359693.1-201ENST00000614959 2407 ntBASIC2.66□□□□□ -1.98
CHD3Q12873 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.66□□□□□ -1.98
CHD3Q12873 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC2.66□□□□□ -1.98
CHD3Q12873 NFIB-202ENST00000380924 840 ntTSL 5 BASIC2.66□□□□□ -1.98
CHD3Q12873 RPL5P18-201ENST00000406671 891 ntBASIC2.66□□□□□ -1.98
CHD3Q12873 AL138799.3-201ENST00000438968 350 ntBASIC2.66□□□□□ -1.98
CHD3Q12873 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC2.66□□□□□ -1.98
CHD3Q12873 RN7SL432P-201ENST00000484057 298 ntBASIC2.66□□□□□ -1.98
CHD3Q12873 YWHAEP4-201ENST00000505390 198 ntBASIC2.66□□□□□ -1.98
CHD3Q12873 SNORA31.21-201ENST00000517180 77 ntBASIC2.66□□□□□ -1.98
CHD3Q12873 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC2.66□□□□□ -1.98
CHD3Q12873 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC2.66□□□□□ -1.98
CHD3Q12873 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC2.66□□□□□ -1.98
CHD3Q12873 AC005242.1-201ENST00000585658 438 ntBASIC2.66□□□□□ -1.98
CHD3Q12873 VN1R84P-201ENST00000593697 235 ntBASIC2.66□□□□□ -1.98
CHD3Q12873 AL359535.1-201ENST00000612100 1087 ntBASIC2.66□□□□□ -1.98
CHD3Q12873 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC2.66□□□□□ -1.98
CHD3Q12873 IGHVIII-44-202ENST00000636235 289 ntBASIC2.66□□□□□ -1.98
CHD3Q12873 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC2.66□□□□□ -1.98
CHD3Q12873 XPOTP1-201ENST00000443317 2398 ntBASIC2.65□□□□□ -1.98
CHD3Q12873 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC2.65□□□□□ -1.98
CHD3Q12873 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC2.65□□□□□ -1.99
CHD3Q12873 AC009487.2-201ENST00000420969 6821 ntBASIC2.65□□□□□ -1.99
CHD3Q12873 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC2.65□□□□□ -1.99
CHD3Q12873 HMGB3P23-201ENST00000414981 585 ntBASIC2.65□□□□□ -1.99
CHD3Q12873 OFD1P11Y-201ENST00000418213 1177 ntBASIC2.65□□□□□ -1.99
CHD3Q12873 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC2.65□□□□□ -1.99
CHD3Q12873 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC2.65□□□□□ -1.99
CHD3Q12873 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC2.65□□□□□ -1.99
CHD3Q12873 RPL31P50-201ENST00000471002 296 ntBASIC2.65□□□□□ -1.99
CHD3Q12873 RPS29P26-201ENST00000477483 171 ntBASIC2.65□□□□□ -1.99
CHD3Q12873 RPL23AP44-201ENST00000482216 473 ntBASIC2.65□□□□□ -1.99
CHD3Q12873 AC147055.1-201ENST00000509261 750 ntBASIC2.65□□□□□ -1.99
CHD3Q12873 AC010374.2-201ENST00000512933 535 ntBASIC2.65□□□□□ -1.99
CHD3Q12873 RNA5SP385-201ENST00000515947 110 ntBASIC2.65□□□□□ -1.99
CHD3Q12873 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC2.65□□□□□ -1.99
CHD3Q12873 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC2.65□□□□□ -1.99
CHD3Q12873 MIR4319-201ENST00000577285 85 ntBASIC2.65□□□□□ -1.99
CHD3Q12873 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC2.65□□□□□ -1.99
CHD3Q12873 AC007423.1-201ENST00000605009 627 ntBASIC2.65□□□□□ -1.99
CHD3Q12873 AC015849.2-201ENST00000605738 409 ntBASIC2.65□□□□□ -1.99
CHD3Q12873 CYCSP41-201ENST00000616920 296 ntBASIC2.65□□□□□ -1.99
CHD3Q12873 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC2.65□□□□□ -1.99
CHD3Q12873 HSP90AA5P-201ENST00000438353 2192 ntBASIC2.65□□□□□ -1.99
CHD3Q12873 MTND5P24-201ENST00000438892 1767 ntBASIC2.65□□□□□ -1.99
CHD3Q12873 RNU4-82P-201ENST00000362443 140 ntBASIC2.64□□□□□ -1.99
CHD3Q12873 U3.42-201ENST00000408746 214 ntBASIC2.64□□□□□ -1.99
CHD3Q12873 RNA5SP107-201ENST00000411358 122 ntBASIC2.64□□□□□ -1.99
CHD3Q12873 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC2.64□□□□□ -1.99
CHD3Q12873 AC003685.2-201ENST00000422795 395 ntBASIC2.64□□□□□ -1.99
CHD3Q12873 AC108734.1-201ENST00000439549 399 ntBASIC2.64□□□□□ -1.99
CHD3Q12873 RPL7P36-201ENST00000444633 681 ntBASIC2.64□□□□□ -1.99
CHD3Q12873 BX276092.4-201ENST00000452056 248 ntBASIC2.64□□□□□ -1.99
CHD3Q12873 AL354710.1-201ENST00000453641 246 ntBASIC2.64□□□□□ -1.99
CHD3Q12873 AP002884.2-201ENST00000471647 395 ntBASIC2.64□□□□□ -1.99
CHD3Q12873 RPS3AP43-201ENST00000479743 781 ntBASIC2.64□□□□□ -1.99
CHD3Q12873 RN7SL283P-201ENST00000489055 303 ntBASIC2.64□□□□□ -1.99
CHD3Q12873 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC2.64□□□□□ -1.99
CHD3Q12873 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC2.64□□□□□ -1.99
CHD3Q12873 MIR2276-201ENST00000516886 89 ntBASIC2.64□□□□□ -1.99
CHD3Q12873 COX6CP8-201ENST00000522620 226 ntBASIC2.64□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms