Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC1.68□□□□□ -2.14
HSPG2P98160 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC1.68□□□□□ -2.14
HSPG2P98160 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
HSPG2P98160 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC1.68□□□□□ -2.14
HSPG2P98160 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC1.68□□□□□ -2.14
HSPG2P98160 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
HSPG2P98160 CYCSP49-201ENST00000420810 319 ntBASIC1.68□□□□□ -2.14
HSPG2P98160 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC1.68□□□□□ -2.14
HSPG2P98160 AC011242.1-201ENST00000433596 1158 ntBASIC1.68□□□□□ -2.14
HSPG2P98160 RPS20P5-201ENST00000434808 360 ntBASIC1.68□□□□□ -2.14
HSPG2P98160 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC1.68□□□□□ -2.14
HSPG2P98160 AC096638.1-201ENST00000444678 216 ntBASIC1.68□□□□□ -2.14
HSPG2P98160 AC108078.3-201ENST00000502633 489 ntBASIC1.68□□□□□ -2.14
HSPG2P98160 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC1.68□□□□□ -2.14
HSPG2P98160 AC090695.1-201ENST00000561269 1222 ntBASIC1.68□□□□□ -2.14
HSPG2P98160 U7.8-201ENST00000619968 63 ntBASIC1.68□□□□□ -2.14
HSPG2P98160 AC079298.2-201ENST00000623885 459 ntBASIC1.68□□□□□ -2.14
HSPG2P98160 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
HSPG2P98160 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
HSPG2P98160 OR10AB1P-202ENST00000641219 1686 ntBASIC1.67□□□□□ -2.14
HSPG2P98160 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.67□□□□□ -2.14
HSPG2P98160 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC1.67□□□□□ -2.14
HSPG2P98160 RNU6-618P-201ENST00000363518 112 ntBASIC1.67□□□□□ -2.14
HSPG2P98160 SNORA36C-201ENST00000384289 132 ntBASIC1.67□□□□□ -2.14
HSPG2P98160 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC1.67□□□□□ -2.14
HSPG2P98160 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC1.67□□□□□ -2.14
HSPG2P98160 AC018634.1-201ENST00000437554 401 ntBASIC1.67□□□□□ -2.14
HSPG2P98160 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC1.67□□□□□ -2.14
HSPG2P98160 NF1P10-201ENST00000613227 742 ntBASIC1.67□□□□□ -2.14
HSPG2P98160 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC1.67□□□□□ -2.14
HSPG2P98160 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
HSPG2P98160 MTCO1P22-201ENST00000604619 1360 ntBASIC1.67□□□□□ -2.14
HSPG2P98160 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
HSPG2P98160 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC1.67□□□□□ -2.14
HSPG2P98160 RPL23AP70-201ENST00000483361 460 ntBASIC1.67□□□□□ -2.14
HSPG2P98160 RNA5SP320-201ENST00000516263 124 ntBASIC1.67□□□□□ -2.14
HSPG2P98160 RN7SKP272-201ENST00000516988 232 ntBASIC1.67□□□□□ -2.14
HSPG2P98160 HMGB1P19-201ENST00000517578 577 ntBASIC1.67□□□□□ -2.14
HSPG2P98160 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC1.67□□□□□ -2.14
HSPG2P98160 AP003117.2-201ENST00000606010 545 ntBASIC1.67□□□□□ -2.14
HSPG2P98160 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC1.67□□□□□ -2.14
HSPG2P98160 AC091903.1-201ENST00000624322 454 ntBASIC1.67□□□□□ -2.14
HSPG2P98160 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC1.67□□□□□ -2.14
HSPG2P98160 USP33-201ENST00000357428 4155 ntTSL 5 BASIC1.67□□□□□ -2.14
HSPG2P98160 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
HSPG2P98160 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC1.67□□□□□ -2.14
HSPG2P98160 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC1.67□□□□□ -2.14
HSPG2P98160 AL513043.1-201ENST00000439124 535 ntBASIC1.67□□□□□ -2.14
HSPG2P98160 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
HSPG2P98160 AL662791.1-201ENST00000441992 928 ntBASIC1.67□□□□□ -2.14
HSPG2P98160 ALDH7A1P3-201ENST00000492517 345 ntBASIC1.67□□□□□ -2.14
HSPG2P98160 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
HSPG2P98160 AC079296.1-202ENST00000521394 960 ntTSL 4 BASIC1.67□□□□□ -2.14
HSPG2P98160 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC1.67□□□□□ -2.14
HSPG2P98160 RANP3-201ENST00000530970 276 ntBASIC1.67□□□□□ -2.14
HSPG2P98160 Z82195.1-201ENST00000604558 398 ntBASIC1.67□□□□□ -2.14
HSPG2P98160 RMST_9.1-201ENST00000619945 193 ntBASIC1.67□□□□□ -2.14
HSPG2P98160 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC1.67□□□□□ -2.14
HSPG2P98160 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
HSPG2P98160 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
HSPG2P98160 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
HSPG2P98160 RNU6-1159P-201ENST00000362933 107 ntBASIC1.66□□□□□ -2.14
HSPG2P98160 NPM1P10-201ENST00000398310 865 ntBASIC1.66□□□□□ -2.14
HSPG2P98160 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
HSPG2P98160 DPH3P2-201ENST00000422618 250 ntBASIC1.66□□□□□ -2.14
HSPG2P98160 AL049610.1-201ENST00000423374 372 ntBASIC1.66□□□□□ -2.14
HSPG2P98160 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC1.66□□□□□ -2.14
HSPG2P98160 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC1.66□□□□□ -2.14
HSPG2P98160 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC1.66□□□□□ -2.14
HSPG2P98160 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC1.66□□□□□ -2.14
HSPG2P98160 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC1.66□□□□□ -2.14
HSPG2P98160 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC1.66□□□□□ -2.14
HSPG2P98160 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
HSPG2P98160 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC1.66□□□□□ -2.14
HSPG2P98160 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC1.66□□□□□ -2.14
HSPG2P98160 TTC39DP-201ENST00000416781 1688 ntBASIC1.66□□□□□ -2.14
HSPG2P98160 BTF3P7-201ENST00000407097 488 ntBASIC1.66□□□□□ -2.14
HSPG2P98160 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC1.66□□□□□ -2.14
HSPG2P98160 RPL23AP4-201ENST00000427757 463 ntBASIC1.66□□□□□ -2.14
HSPG2P98160 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC1.66□□□□□ -2.14
HSPG2P98160 Z99127.2-201ENST00000441426 334 ntBASIC1.66□□□□□ -2.14
HSPG2P98160 RPL9P6-201ENST00000492764 598 ntBASIC1.66□□□□□ -2.14
HSPG2P98160 AC234781.5-201ENST00000508429 271 ntBASIC1.66□□□□□ -2.14
HSPG2P98160 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC1.66□□□□□ -2.14
HSPG2P98160 AC244205.2-202ENST00000635781 342 ntBASIC1.66□□□□□ -2.14
HSPG2P98160 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC1.66□□□□□ -2.14
HSPG2P98160 AC080128.1-201ENST00000474389 1917 ntBASIC1.66□□□□□ -2.14
HSPG2P98160 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC1.66□□□□□ -2.14
HSPG2P98160 AC118282.1-201ENST00000506408 765 ntBASIC1.66□□□□□ -2.14
HSPG2P98160 AC113430.1-201ENST00000506872 718 ntBASIC1.66□□□□□ -2.14
HSPG2P98160 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC1.66□□□□□ -2.14
HSPG2P98160 AC119751.1-201ENST00000513357 765 ntBASIC1.66□□□□□ -2.14
HSPG2P98160 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC1.66□□□□□ -2.14
HSPG2P98160 TGIF1P1-201ENST00000558095 802 ntBASIC1.66□□□□□ -2.14
HSPG2P98160 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC1.66□□□□□ -2.14
HSPG2P98160 VN1R9P-201ENST00000614184 867 ntBASIC1.66□□□□□ -2.14
HSPG2P98160 AL355493.4-201ENST00000618530 292 ntBASIC1.66□□□□□ -2.14
HSPG2P98160 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
HSPG2P98160 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
HSPG2P98160 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC1.66□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 98.2 ms