Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.94□□□□□ -2.1
PRKDCP78527 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
PRKDCP78527 U8.13-201ENST00000390842 128 ntBASIC1.94□□□□□ -2.1
PRKDCP78527 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
PRKDCP78527 MORF4L1P6-201ENST00000418771 268 ntBASIC1.94□□□□□ -2.1
PRKDCP78527 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC1.94□□□□□ -2.1
PRKDCP78527 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC1.94□□□□□ -2.1
PRKDCP78527 AC108471.1-201ENST00000513977 287 ntBASIC1.94□□□□□ -2.1
PRKDCP78527 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.94□□□□□ -2.1
PRKDCP78527 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
PRKDCP78527 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC1.94□□□□□ -2.1
PRKDCP78527 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC1.94□□□□□ -2.1
PRKDCP78527 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.94□□□□□ -2.1
PRKDCP78527 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC1.94□□□□□ -2.1
PRKDCP78527 RNU6-321P-201ENST00000410912 106 ntBASIC1.94□□□□□ -2.1
PRKDCP78527 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC1.94□□□□□ -2.1
PRKDCP78527 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC1.94□□□□□ -2.1
PRKDCP78527 RANP3-201ENST00000530970 276 ntBASIC1.94□□□□□ -2.1
PRKDCP78527 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
PRKDCP78527 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC1.94□□□□□ -2.1
PRKDCP78527 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
PRKDCP78527 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC1.94□□□□□ -2.1
PRKDCP78527 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
PRKDCP78527 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC1.93□□□□□ -2.1
PRKDCP78527 AC245291.1-201ENST00000419501 328 ntBASIC1.93□□□□□ -2.1
PRKDCP78527 AC009263.1-201ENST00000441193 1239 ntBASIC1.93□□□□□ -2.1
PRKDCP78527 SRIP1-201ENST00000489235 288 ntBASIC1.93□□□□□ -2.1
PRKDCP78527 ARL2BPP6-201ENST00000512757 439 ntBASIC1.93□□□□□ -2.1
PRKDCP78527 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC1.93□□□□□ -2.1
PRKDCP78527 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC1.93□□□□□ -2.1
PRKDCP78527 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
PRKDCP78527 IGKV1OR2-6-201ENST00000603485 277 ntBASIC1.93□□□□□ -2.1
PRKDCP78527 AC009318.2-201ENST00000610917 651 ntBASIC1.93□□□□□ -2.1
PRKDCP78527 AC244205.2-202ENST00000635781 342 ntBASIC1.93□□□□□ -2.1
PRKDCP78527 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
PRKDCP78527 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
PRKDCP78527 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC1.93□□□□□ -2.1
PRKDCP78527 AC011602.1-201ENST00000546484 331 ntBASIC1.93□□□□□ -2.1
PRKDCP78527 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC1.93□□□□□ -2.1
PRKDCP78527 AC010198.2-201ENST00000550612 259 ntBASIC1.93□□□□□ -2.1
PRKDCP78527 AP005136.1-201ENST00000579765 429 ntBASIC1.93□□□□□ -2.1
PRKDCP78527 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC1.93□□□□□ -2.1
PRKDCP78527 AL138820.1-201ENST00000617901 5305 ntBASIC1.93□□□□□ -2.1
PRKDCP78527 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
PRKDCP78527 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC1.93□□□□□ -2.1
PRKDCP78527 AL356292.1-201ENST00000283110 373 ntBASIC1.93□□□□□ -2.1
PRKDCP78527 AC092013.1-201ENST00000438795 332 ntBASIC1.93□□□□□ -2.1
PRKDCP78527 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC1.93□□□□□ -2.1
PRKDCP78527 RN7SKP272-201ENST00000516988 232 ntBASIC1.93□□□□□ -2.1
PRKDCP78527 AC141257.3-201ENST00000572906 215 ntBASIC1.93□□□□□ -2.1
PRKDCP78527 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC1.93□□□□□ -2.1
PRKDCP78527 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC1.93□□□□□ -2.1
PRKDCP78527 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC1.93□□□□□ -2.1
PRKDCP78527 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
PRKDCP78527 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC1.93□□□□□ -2.1
PRKDCP78527 AL356320.1-201ENST00000429616 163 ntBASIC1.93□□□□□ -2.1
PRKDCP78527 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC1.93□□□□□ -2.1
PRKDCP78527 AC068657.1-201ENST00000520807 306 ntBASIC1.93□□□□□ -2.1
PRKDCP78527 AC090281.1-201ENST00000523019 276 ntBASIC1.93□□□□□ -2.1
PRKDCP78527 TRAV11-201ENST00000539512 339 ntBASIC1.93□□□□□ -2.1
PRKDCP78527 SNORA35B-201ENST00000607417 129 ntBASIC1.93□□□□□ -2.1
PRKDCP78527 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC1.93□□□□□ -2.1
PRKDCP78527 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
PRKDCP78527 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC1.92□□□□□ -2.1
PRKDCP78527 ADAM3A-203ENST00000461344 2157 ntBASIC1.92□□□□□ -2.1
PRKDCP78527 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC1.92□□□□□ -2.1
PRKDCP78527 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
PRKDCP78527 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
PRKDCP78527 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
PRKDCP78527 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
PRKDCP78527 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
PRKDCP78527 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC1.92□□□□□ -2.1
PRKDCP78527 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC1.92□□□□□ -2.1
PRKDCP78527 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC1.92□□□□□ -2.1
PRKDCP78527 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC1.92□□□□□ -2.1
PRKDCP78527 AC007621.1-201ENST00000604544 437 ntBASIC1.92□□□□□ -2.1
PRKDCP78527 RMST_9.1-201ENST00000619945 193 ntBASIC1.92□□□□□ -2.1
PRKDCP78527 AC079298.2-201ENST00000623885 459 ntBASIC1.92□□□□□ -2.1
PRKDCP78527 AL592494.2-201ENST00000425455 1548 ntBASIC1.92□□□□□ -2.1
PRKDCP78527 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
PRKDCP78527 U3.6-201ENST00000363622 211 ntBASIC1.92□□□□□ -2.1
PRKDCP78527 RPL23AP4-201ENST00000427757 463 ntBASIC1.92□□□□□ -2.1
PRKDCP78527 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC1.92□□□□□ -2.1
PRKDCP78527 OR6K1P-201ENST00000456766 971 ntBASIC1.92□□□□□ -2.1
PRKDCP78527 AL589740.1-201ENST00000457513 756 ntTSL 3 BASIC1.92□□□□□ -2.1
PRKDCP78527 AC018630.1-201ENST00000541376 925 ntBASIC1.92□□□□□ -2.1
PRKDCP78527 SETP1-201ENST00000556014 845 ntBASIC1.92□□□□□ -2.1
PRKDCP78527 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC1.92□□□□□ -2.1
PRKDCP78527 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.92□□□□□ -2.1
PRKDCP78527 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
PRKDCP78527 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC1.92□□□□□ -2.1
PRKDCP78527 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
PRKDCP78527 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC1.92□□□□□ -2.1
PRKDCP78527 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC1.92□□□□□ -2.1
PRKDCP78527 RNA5SP88-201ENST00000365560 109 ntBASIC1.92□□□□□ -2.1
PRKDCP78527 AC007677.1-201ENST00000445757 515 ntBASIC1.92□□□□□ -2.1
PRKDCP78527 AC008507.1-201ENST00000587506 734 ntBASIC1.92□□□□□ -2.1
PRKDCP78527 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC1.92□□□□□ -2.1
PRKDCP78527 USP33-201ENST00000357428 4155 ntTSL 5 BASIC1.92□□□□□ -2.1
PRKDCP78527 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC1.91□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms