Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.53□□□□□ -1.68
HOXC9P31274 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC4.53□□□□□ -1.68
HOXC9P31274 AC090312.2-201ENST00000582687 378 ntBASIC4.53□□□□□ -1.68
HOXC9P31274 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC4.53□□□□□ -1.68
HOXC9P31274 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC4.53□□□□□ -1.68
HOXC9P31274 AC006557.5-201ENST00000603126 811 ntBASIC4.53□□□□□ -1.68
HOXC9P31274 AC002487.1-201ENST00000604565 994 ntBASIC4.53□□□□□ -1.68
HOXC9P31274 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC4.53□□□□□ -1.68
HOXC9P31274 AC009237.15-201ENST00000610252 501 ntBASIC4.53□□□□□ -1.68
HOXC9P31274 AC010975.3-201ENST00000618727 978 ntBASIC4.53□□□□□ -1.68
HOXC9P31274 VN1R7P-201ENST00000619242 903 ntBASIC4.53□□□□□ -1.68
HOXC9P31274 AC097520.1-201ENST00000624435 385 ntBASIC4.53□□□□□ -1.68
HOXC9P31274 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC4.53□□□□□ -1.68
HOXC9P31274 AL451142.2-201ENST00000429076 2090 ntBASIC4.53□□□□□ -1.68
HOXC9P31274 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
HOXC9P31274 AC099786.3-201ENST00000565735 1410 ntBASIC4.53□□□□□ -1.68
HOXC9P31274 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.53□□□□□ -1.68
HOXC9P31274 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC4.53□□□□□ -1.68
HOXC9P31274 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
HOXC9P31274 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
HOXC9P31274 LINC01355-201ENST00000566551 5444 ntBASIC4.52□□□□□ -1.69
HOXC9P31274 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC4.52□□□□□ -1.69
HOXC9P31274 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC4.52□□□□□ -1.69
HOXC9P31274 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
HOXC9P31274 PAPPA-AS1-201ENST00000445861 2450 ntBASIC4.52□□□□□ -1.69
HOXC9P31274 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
HOXC9P31274 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
HOXC9P31274 AC090971.4-201ENST00000560291 1800 ntBASIC4.52□□□□□ -1.69
HOXC9P31274 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC4.52□□□□□ -1.69
HOXC9P31274 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC4.52□□□□□ -1.69
HOXC9P31274 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
HOXC9P31274 TAF9BP1-201ENST00000396646 746 ntBASIC4.52□□□□□ -1.69
HOXC9P31274 AL122016.1-201ENST00000403365 367 ntBASIC4.52□□□□□ -1.69
HOXC9P31274 RN7SKP247-201ENST00000411094 308 ntBASIC4.52□□□□□ -1.69
HOXC9P31274 AL160275.2-201ENST00000412010 394 ntBASIC4.52□□□□□ -1.69
HOXC9P31274 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC4.52□□□□□ -1.69
HOXC9P31274 TRAPPC2P10-201ENST00000415662 323 ntBASIC4.52□□□□□ -1.69
HOXC9P31274 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC4.52□□□□□ -1.69
HOXC9P31274 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC4.52□□□□□ -1.69
HOXC9P31274 AC092013.1-201ENST00000438795 332 ntBASIC4.52□□□□□ -1.69
HOXC9P31274 ZNF886P-201ENST00000450781 723 ntBASIC4.52□□□□□ -1.69
HOXC9P31274 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC4.52□□□□□ -1.69
HOXC9P31274 NAP1L1P3-201ENST00000462291 880 ntBASIC4.52□□□□□ -1.69
HOXC9P31274 AL049873.1-201ENST00000480540 376 ntBASIC4.52□□□□□ -1.69
HOXC9P31274 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC4.52□□□□□ -1.69
HOXC9P31274 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC4.52□□□□□ -1.69
HOXC9P31274 AC023141.12-201ENST00000512399 199 ntBASIC4.52□□□□□ -1.69
HOXC9P31274 AC005798.1-201ENST00000513715 387 ntBASIC4.52□□□□□ -1.69
HOXC9P31274 RNU6-311P-201ENST00000516224 102 ntBASIC4.52□□□□□ -1.69
HOXC9P31274 RNU6-416P-201ENST00000516265 103 ntBASIC4.52□□□□□ -1.69
HOXC9P31274 RNU1-103P-201ENST00000516502 125 ntBASIC4.52□□□□□ -1.69
HOXC9P31274 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC4.52□□□□□ -1.69
HOXC9P31274 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC4.52□□□□□ -1.69
HOXC9P31274 MTND4LP24-201ENST00000572277 291 ntBASIC4.52□□□□□ -1.69
HOXC9P31274 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC4.52□□□□□ -1.69
HOXC9P31274 VN1R88P-201ENST00000596787 292 ntBASIC4.52□□□□□ -1.69
HOXC9P31274 NTAN1P1-201ENST00000603150 646 ntBASIC4.52□□□□□ -1.69
HOXC9P31274 AL392112.1-201ENST00000605115 829 ntBASIC4.52□□□□□ -1.69
HOXC9P31274 AP000238.1-201ENST00000608759 426 ntBASIC4.52□□□□□ -1.69
HOXC9P31274 AC009464.1-201ENST00000615731 469 ntBASIC4.52□□□□□ -1.69
HOXC9P31274 AC140725.3-201ENST00000616193 880 ntBASIC4.52□□□□□ -1.69
HOXC9P31274 AC026422.1-201ENST00000623961 452 ntBASIC4.52□□□□□ -1.69
HOXC9P31274 AC068647.1-201ENST00000489539 2265 ntBASIC4.52□□□□□ -1.69
HOXC9P31274 MTND4P10-201ENST00000446199 1363 ntBASIC4.52□□□□□ -1.69
HOXC9P31274 AL353743.1-202ENST00000431724 1695 ntBASIC4.51□□□□□ -1.69
HOXC9P31274 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
HOXC9P31274 AL355578.1-201ENST00000607405 1328 ntBASIC4.51□□□□□ -1.69
HOXC9P31274 PHKBP1-201ENST00000450951 1951 ntBASIC4.51□□□□□ -1.69
HOXC9P31274 AC018555.1-201ENST00000567548 1980 ntBASIC4.51□□□□□ -1.69
HOXC9P31274 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
HOXC9P31274 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
HOXC9P31274 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HOXC9P31274 ASNSP1-201ENST00000518311 1939 ntBASIC4.51□□□□□ -1.69
HOXC9P31274 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
HOXC9P31274 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC4.51□□□□□ -1.69
HOXC9P31274 MTCO1P56-201ENST00000401674 224 ntBASIC4.51□□□□□ -1.69
HOXC9P31274 RNU6-603P-201ENST00000411403 107 ntBASIC4.51□□□□□ -1.69
HOXC9P31274 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC4.51□□□□□ -1.69
HOXC9P31274 CYCSP10-201ENST00000417973 294 ntBASIC4.51□□□□□ -1.69
HOXC9P31274 RPS3AP37-201ENST00000419176 745 ntBASIC4.51□□□□□ -1.69
HOXC9P31274 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXC9P31274 AC006989.1-201ENST00000427212 131 ntBASIC4.51□□□□□ -1.69
HOXC9P31274 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXC9P31274 NPM1P24-201ENST00000428039 894 ntBASIC4.51□□□□□ -1.69
HOXC9P31274 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXC9P31274 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC4.51□□□□□ -1.69
HOXC9P31274 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXC9P31274 ELOCP13-201ENST00000443934 329 ntBASIC4.51□□□□□ -1.69
HOXC9P31274 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC4.51□□□□□ -1.69
HOXC9P31274 MRPL35P4-201ENST00000453682 566 ntBASIC4.51□□□□□ -1.69
HOXC9P31274 BX248409.1-201ENST00000455497 255 ntBASIC4.51□□□□□ -1.69
HOXC9P31274 AC069528.1-202ENST00000482888 637 ntBASIC4.51□□□□□ -1.69
HOXC9P31274 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXC9P31274 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC4.51□□□□□ -1.69
HOXC9P31274 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC4.51□□□□□ -1.69
HOXC9P31274 EEF1A1P37-201ENST00000522748 715 ntBASIC4.51□□□□□ -1.69
HOXC9P31274 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXC9P31274 AC044913.1-201ENST00000557200 430 ntBASIC4.51□□□□□ -1.69
HOXC9P31274 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC4.51□□□□□ -1.69
HOXC9P31274 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms