Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC3.03□□□□□ -1.92
USF1P22415 RNF138P1-201ENST00000502765 546 ntBASIC3.03□□□□□ -1.92
USF1P22415 HSPD1P15-201ENST00000505573 1122 ntBASIC3.03□□□□□ -1.92
USF1P22415 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.03□□□□□ -1.92
USF1P22415 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC3.03□□□□□ -1.92
USF1P22415 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.03□□□□□ -1.92
USF1P22415 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC3.03□□□□□ -1.92
USF1P22415 AC007458.1-201ENST00000542812 373 ntBASIC3.03□□□□□ -1.92
USF1P22415 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC3.03□□□□□ -1.92
USF1P22415 OR4G1P-201ENST00000588632 938 ntBASIC3.03□□□□□ -1.92
USF1P22415 IGHV3-29-201ENST00000604817 344 ntBASIC3.03□□□□□ -1.92
USF1P22415 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.03□□□□□ -1.92
USF1P22415 AL592295.2-201ENST00000612578 206 ntBASIC3.03□□□□□ -1.92
USF1P22415 RNVU1-4-201ENST00000612985 164 ntBASIC3.03□□□□□ -1.92
USF1P22415 AC079684.1-201ENST00000621405 437 ntBASIC3.03□□□□□ -1.92
USF1P22415 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC3.03□□□□□ -1.92
USF1P22415 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.03□□□□□ -1.92
USF1P22415 MIR7153-201ENST00000637758 57 ntBASIC3.03□□□□□ -1.92
USF1P22415 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.03□□□□□ -1.92
USF1P22415 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.93
USF1P22415 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.03□□□□□ -1.93
USF1P22415 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.93
USF1P22415 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
USF1P22415 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.02□□□□□ -1.93
USF1P22415 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
USF1P22415 PWAR6-201ENST00000552334 4618 ntBASIC3.02□□□□□ -1.93
USF1P22415 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.02□□□□□ -1.93
USF1P22415 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.02□□□□□ -1.93
USF1P22415 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.02□□□□□ -1.93
USF1P22415 MTCO1P6-201ENST00000481192 1384 ntBASIC3.02□□□□□ -1.93
USF1P22415 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.02□□□□□ -1.93
USF1P22415 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.02□□□□□ -1.93
USF1P22415 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC3.02□□□□□ -1.93
USF1P22415 SNORD56.4-201ENST00000363883 71 ntBASIC3.02□□□□□ -1.93
USF1P22415 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
USF1P22415 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.02□□□□□ -1.93
USF1P22415 MTND4P22-201ENST00000413116 1169 ntBASIC3.02□□□□□ -1.93
USF1P22415 MTND2P16-201ENST00000419987 799 ntBASIC3.02□□□□□ -1.93
USF1P22415 FAM204CP-201ENST00000424489 642 ntBASIC3.02□□□□□ -1.93
USF1P22415 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.02□□□□□ -1.93
USF1P22415 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.02□□□□□ -1.93
USF1P22415 AC092170.1-201ENST00000440211 356 ntBASIC3.02□□□□□ -1.93
USF1P22415 ANKRD30BP3-201ENST00000444850 1070 ntBASIC3.02□□□□□ -1.93
USF1P22415 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC3.02□□□□□ -1.93
USF1P22415 BX510359.1-201ENST00000456973 237 ntBASIC3.02□□□□□ -1.93
USF1P22415 U3.44-201ENST00000458938 192 ntBASIC3.02□□□□□ -1.93
USF1P22415 RN7SL807P-201ENST00000470923 297 ntBASIC3.02□□□□□ -1.93
USF1P22415 RPS27P23-201ENST00000487608 251 ntBASIC3.02□□□□□ -1.93
USF1P22415 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC3.02□□□□□ -1.93
USF1P22415 RNU6-202P-201ENST00000515998 96 ntBASIC3.02□□□□□ -1.93
USF1P22415 SCARNA13-201ENST00000516672 275 ntBASIC3.02□□□□□ -1.93
USF1P22415 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC3.02□□□□□ -1.93
USF1P22415 AP000889.1-201ENST00000530968 660 ntBASIC3.02□□□□□ -1.93
USF1P22415 CASP1-212ENST00000531166 300 ntTSL 5 BASIC3.02□□□□□ -1.93
USF1P22415 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC3.02□□□□□ -1.93
USF1P22415 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3.02□□□□□ -1.93
USF1P22415 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
USF1P22415 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.02□□□□□ -1.93
USF1P22415 MIR5186-201ENST00000577504 120 ntBASIC3.02□□□□□ -1.93
USF1P22415 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.02□□□□□ -1.93
USF1P22415 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.02□□□□□ -1.93
USF1P22415 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC3.02□□□□□ -1.93
USF1P22415 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.02□□□□□ -1.93
USF1P22415 AC011468.4-201ENST00000603942 409 ntBASIC3.02□□□□□ -1.93
USF1P22415 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC3.02□□□□□ -1.93
USF1P22415 AC021851.1-201ENST00000608537 1082 ntBASIC3.02□□□□□ -1.93
USF1P22415 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC3.02□□□□□ -1.93
USF1P22415 AC008121.2-201ENST00000614647 523 ntBASIC3.02□□□□□ -1.93
USF1P22415 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
USF1P22415 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC3.02□□□□□ -1.93
USF1P22415 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.02□□□□□ -1.93
USF1P22415 SNORA50A-202ENST00000629536 136 ntBASIC3.02□□□□□ -1.93
USF1P22415 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC3.02□□□□□ -1.93
USF1P22415 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
USF1P22415 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
USF1P22415 RIOK3P1-201ENST00000418778 1528 ntBASIC3.02□□□□□ -1.93
USF1P22415 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC3.02□□□□□ -1.93
USF1P22415 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.02□□□□□ -1.93
USF1P22415 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.02□□□□□ -1.93
USF1P22415 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
USF1P22415 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.02□□□□□ -1.93
USF1P22415 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.02□□□□□ -1.93
USF1P22415 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
USF1P22415 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
USF1P22415 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.01□□□□□ -1.93
USF1P22415 ZNF37BP-203ENST00000452306 1352 ntBASIC3.01□□□□□ -1.93
USF1P22415 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
USF1P22415 AC008432.1-201ENST00000615912 1320 ntBASIC3.01□□□□□ -1.93
USF1P22415 AL359893.1-201ENST00000447628 1580 ntBASIC3.01□□□□□ -1.93
USF1P22415 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
USF1P22415 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.01□□□□□ -1.93
USF1P22415 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
USF1P22415 RNU6-335P-201ENST00000364563 113 ntBASIC3.01□□□□□ -1.93
USF1P22415 RNU6-650P-201ENST00000365658 111 ntBASIC3.01□□□□□ -1.93
USF1P22415 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
USF1P22415 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
USF1P22415 ESD-201ENST00000378697 1079 ntTSL 5 BASIC3.01□□□□□ -1.93
USF1P22415 U3.19-201ENST00000390893 196 ntBASIC3.01□□□□□ -1.93
USF1P22415 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
USF1P22415 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.01□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms