Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 ATP8A2P3-201ENST00000426792 1536 ntBASIC2.74□□□□□ -1.97
VCANP13611 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC2.74□□□□□ -1.97
VCANP13611 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.74□□□□□ -1.97
VCANP13611 SLC30A6-201ENST00000282587 5089 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
VCANP13611 AC135721.1-201ENST00000497954 479 ntBASIC2.74□□□□□ -1.97
VCANP13611 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.74□□□□□ -1.97
VCANP13611 AC104027.1-201ENST00000521887 300 ntBASIC2.74□□□□□ -1.97
VCANP13611 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
VCANP13611 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
VCANP13611 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
VCANP13611 MTND5P28-201ENST00000438005 1594 ntBASIC2.74□□□□□ -1.97
VCANP13611 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC2.74□□□□□ -1.97
VCANP13611 CUL1P1-201ENST00000509510 2425 ntBASIC2.74□□□□□ -1.97
VCANP13611 Y_RNA.295-201ENST00000364918 102 ntBASIC2.74□□□□□ -1.97
VCANP13611 RPS20P5-201ENST00000434808 360 ntBASIC2.74□□□□□ -1.97
VCANP13611 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC2.74□□□□□ -1.97
VCANP13611 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC2.74□□□□□ -1.97
VCANP13611 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.74□□□□□ -1.97
VCANP13611 AC106730.3-201ENST00000624568 641 ntBASIC2.74□□□□□ -1.97
VCANP13611 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC2.74□□□□□ -1.97
VCANP13611 AC244205.2-202ENST00000635781 342 ntBASIC2.74□□□□□ -1.97
VCANP13611 YES1-203ENST00000577961 4554 ntTSL 5 BASIC2.74□□□□□ -1.97
VCANP13611 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
VCANP13611 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
VCANP13611 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
VCANP13611 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
VCANP13611 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
VCANP13611 KATNBL1P2-201ENST00000433311 835 ntBASIC2.74□□□□□ -1.97
VCANP13611 HMGB3P6-201ENST00000444896 598 ntBASIC2.74□□□□□ -1.97
VCANP13611 HMGN1P5-201ENST00000448591 263 ntBASIC2.74□□□□□ -1.97
VCANP13611 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC2.74□□□□□ -1.97
VCANP13611 RN7SL636P-201ENST00000497504 294 ntBASIC2.74□□□□□ -1.97
VCANP13611 GNAI2P1-201ENST00000541815 315 ntBASIC2.74□□□□□ -1.97
VCANP13611 AC107871.2-201ENST00000612894 502 ntBASIC2.74□□□□□ -1.97
VCANP13611 AC138627.1-204ENST00000641894 765 ntBASIC2.74□□□□□ -1.97
VCANP13611 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC2.73□□□□□ -1.97
VCANP13611 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.73□□□□□ -1.97
VCANP13611 AC107081.3-201ENST00000612715 2034 ntBASIC2.73□□□□□ -1.97
VCANP13611 MIR337-201ENST00000362281 93 ntBASIC2.73□□□□□ -1.97
VCANP13611 AC007621.1-201ENST00000604544 437 ntBASIC2.73□□□□□ -1.97
VCANP13611 AC074276.2-201ENST00000619891 348 ntBASIC2.73□□□□□ -1.97
VCANP13611 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
VCANP13611 KPNA2P2-201ENST00000419546 1489 ntBASIC2.73□□□□□ -1.97
VCANP13611 MIR1276-201ENST00000408707 83 ntBASIC2.73□□□□□ -1.97
VCANP13611 Z82205.1-201ENST00000428456 297 ntBASIC2.73□□□□□ -1.97
VCANP13611 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC2.73□□□□□ -1.97
VCANP13611 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC2.73□□□□□ -1.97
VCANP13611 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC2.73□□□□□ -1.97
VCANP13611 AC068587.2-201ENST00000478386 781 ntBASIC2.73□□□□□ -1.97
VCANP13611 AC026412.2-201ENST00000512270 1075 ntBASIC2.73□□□□□ -1.97
VCANP13611 SNORA4-201ENST00000584302 138 ntBASIC2.73□□□□□ -1.97
VCANP13611 AC117529.2-201ENST00000512159 2068 ntBASIC2.73□□□□□ -1.97
VCANP13611 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC2.73□□□□□ -1.97
VCANP13611 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC2.73□□□□□ -1.97
VCANP13611 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
VCANP13611 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
VCANP13611 RNU6-661P-201ENST00000362409 107 ntBASIC2.72□□□□□ -1.97
VCANP13611 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC2.72□□□□□ -1.97
VCANP13611 AC108667.1-201ENST00000428618 249 ntBASIC2.72□□□□□ -1.97
VCANP13611 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC2.72□□□□□ -1.97
VCANP13611 RPL29P29-201ENST00000448725 423 ntBASIC2.72□□□□□ -1.97
VCANP13611 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.72□□□□□ -1.97
VCANP13611 AC107222.1-201ENST00000510899 637 ntBASIC2.72□□□□□ -1.97
VCANP13611 AC108471.1-201ENST00000513977 287 ntBASIC2.72□□□□□ -1.97
VCANP13611 RNA5SP320-201ENST00000516263 124 ntBASIC2.72□□□□□ -1.97
VCANP13611 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC2.72□□□□□ -1.97
VCANP13611 AL022311.1-201ENST00000623726 19416 ntBASIC2.72□□□□□ -1.97
VCANP13611 DDX18P3-201ENST00000404856 2007 ntBASIC2.72□□□□□ -1.97
VCANP13611 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
VCANP13611 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
VCANP13611 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC2.72□□□□□ -1.97
VCANP13611 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC2.72□□□□□ -1.97
VCANP13611 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC2.72□□□□□ -1.97
VCANP13611 RNA5SP88-201ENST00000365560 109 ntBASIC2.72□□□□□ -1.97
VCANP13611 MTHFD2P4-201ENST00000515074 1025 ntBASIC2.72□□□□□ -1.97
VCANP13611 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC2.72□□□□□ -1.97
VCANP13611 AC009237.17-201ENST00000618111 748 ntBASIC2.72□□□□□ -1.97
VCANP13611 YWHAEP7-203ENST00000622054 312 ntBASIC2.72□□□□□ -1.97
VCANP13611 AL109809.4-201ENST00000603520 2185 ntBASIC2.72□□□□□ -1.97
VCANP13611 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC2.72□□□□□ -1.97
VCANP13611 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
VCANP13611 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
VCANP13611 AL160275.2-201ENST00000412010 394 ntBASIC2.72□□□□□ -1.97
VCANP13611 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC2.72□□□□□ -1.97
VCANP13611 NPM1P29-201ENST00000483112 803 ntBASIC2.72□□□□□ -1.97
VCANP13611 FAM92A1P2-202ENST00000504766 877 ntBASIC2.72□□□□□ -1.97
VCANP13611 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.72□□□□□ -1.97
VCANP13611 AL133271.1-201ENST00000538229 291 ntBASIC2.72□□□□□ -1.97
VCANP13611 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
VCANP13611 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.97
VCANP13611 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.97
VCANP13611 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC2.71□□□□□ -1.97
VCANP13611 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
VCANP13611 AC018634.1-201ENST00000437554 401 ntBASIC2.71□□□□□ -1.98
VCANP13611 AC234781.5-201ENST00000508429 271 ntBASIC2.71□□□□□ -1.98
VCANP13611 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC2.71□□□□□ -1.98
VCANP13611 PSMD5-AS1-215ENST00000640622 205 ntBASIC2.71□□□□□ -1.98
VCANP13611 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC2.71□□□□□ -1.98
VCANP13611 GABRG2-229ENST00000641017 3628 ntBASIC2.71□□□□□ -1.98
VCANP13611 RNY1P14-201ENST00000384426 108 ntBASIC2.71□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 136.8 ms