Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 ANKRD20A17P-201ENST00000511745 1330 ntBASIC4.87□□□□□ -1.63
COL3A1P02461 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL3A1P02461 MTND5P11-201ENST00000511037 1812 ntBASIC4.87□□□□□ -1.63
COL3A1P02461 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL3A1P02461 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL3A1P02461 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC4.87□□□□□ -1.63
COL3A1P02461 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
COL3A1P02461 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC4.87□□□□□ -1.63
COL3A1P02461 SGO1P2-201ENST00000429458 1589 ntBASIC4.87□□□□□ -1.63
COL3A1P02461 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL3A1P02461 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
COL3A1P02461 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
COL3A1P02461 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC4.87□□□□□ -1.63
COL3A1P02461 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL3A1P02461 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL3A1P02461 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC4.87□□□□□ -1.63
COL3A1P02461 MTND1P21-201ENST00000412991 285 ntBASIC4.87□□□□□ -1.63
COL3A1P02461 AL158825.1-201ENST00000414735 521 ntBASIC4.87□□□□□ -1.63
COL3A1P02461 AL139415.2-201ENST00000431968 163 ntBASIC4.87□□□□□ -1.63
COL3A1P02461 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC4.87□□□□□ -1.63
COL3A1P02461 YWHAZP7-201ENST00000436906 631 ntBASIC4.87□□□□□ -1.63
COL3A1P02461 COX7BP2-201ENST00000437976 242 ntBASIC4.87□□□□□ -1.63
COL3A1P02461 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC4.87□□□□□ -1.63
COL3A1P02461 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC4.87□□□□□ -1.63
COL3A1P02461 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC4.87□□□□□ -1.63
COL3A1P02461 RPL9P33-201ENST00000484311 566 ntBASIC4.87□□□□□ -1.63
COL3A1P02461 AC011825.1-201ENST00000484967 388 ntBASIC4.87□□□□□ -1.63
COL3A1P02461 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC4.87□□□□□ -1.63
COL3A1P02461 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC4.87□□□□□ -1.63
COL3A1P02461 AC010285.3-201ENST00000511668 676 ntBASIC4.87□□□□□ -1.63
COL3A1P02461 RN7SKP18-201ENST00000516005 275 ntBASIC4.87□□□□□ -1.63
COL3A1P02461 RN7SKP209-201ENST00000516888 304 ntBASIC4.87□□□□□ -1.63
COL3A1P02461 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
COL3A1P02461 AP000873.5-201ENST00000533906 236 ntBASIC4.87□□□□□ -1.63
COL3A1P02461 AC092747.2-201ENST00000545069 983 ntBASIC4.87□□□□□ -1.63
COL3A1P02461 AC087883.1-201ENST00000551882 391 ntBASIC4.87□□□□□ -1.63
COL3A1P02461 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC4.87□□□□□ -1.63
COL3A1P02461 AP005205.1-201ENST00000563503 508 ntBASIC4.87□□□□□ -1.63
COL3A1P02461 AL360157.1-201ENST00000565962 87 ntBASIC4.87□□□□□ -1.63
COL3A1P02461 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC4.87□□□□□ -1.63
COL3A1P02461 VN1R82P-201ENST00000601481 356 ntBASIC4.87□□□□□ -1.63
COL3A1P02461 AC007179.3-201ENST00000604976 235 ntBASIC4.87□□□□□ -1.63
COL3A1P02461 MIR486-1-201ENST00000612171 68 ntBASIC4.87□□□□□ -1.63
COL3A1P02461 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
COL3A1P02461 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
COL3A1P02461 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC4.87□□□□□ -1.63
COL3A1P02461 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL3A1P02461 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL3A1P02461 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC4.86□□□□□ -1.63
COL3A1P02461 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC4.86□□□□□ -1.63
COL3A1P02461 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.86□□□□□ -1.63
COL3A1P02461 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL3A1P02461 AL121834.1-202ENST00000404494 277 ntBASIC4.86□□□□□ -1.63
COL3A1P02461 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC4.86□□□□□ -1.63
COL3A1P02461 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC4.86□□□□□ -1.63
COL3A1P02461 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
COL3A1P02461 MTND1P32-201ENST00000433043 938 ntBASIC4.86□□□□□ -1.63
COL3A1P02461 RPL21P110-201ENST00000433345 446 ntBASIC4.86□□□□□ -1.63
COL3A1P02461 AL356535.1-201ENST00000440335 398 ntBASIC4.86□□□□□ -1.63
COL3A1P02461 MTCO1P19-201ENST00000443487 500 ntBASIC4.86□□□□□ -1.63
COL3A1P02461 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC4.86□□□□□ -1.63
COL3A1P02461 AP000542.1-201ENST00000448473 371 ntBASIC4.86□□□□□ -1.63
COL3A1P02461 TPMTP4-201ENST00000450749 678 ntBASIC4.86□□□□□ -1.63
COL3A1P02461 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC4.86□□□□□ -1.63
COL3A1P02461 AL109741.2-201ENST00000455561 343 ntBASIC4.86□□□□□ -1.63
COL3A1P02461 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC4.86□□□□□ -1.63
COL3A1P02461 AC069499.1-201ENST00000489433 509 ntBASIC4.86□□□□□ -1.63
COL3A1P02461 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC4.86□□□□□ -1.63
COL3A1P02461 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC4.86□□□□□ -1.63
COL3A1P02461 SNORA74D-201ENST00000516404 141 ntBASIC4.86□□□□□ -1.63
COL3A1P02461 SOD1P3-201ENST00000518682 454 ntBASIC4.86□□□□□ -1.63
COL3A1P02461 AP004247.1-201ENST00000531556 1289 ntBASIC4.86□□□□□ -1.63
COL3A1P02461 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
COL3A1P02461 AC092851.1-201ENST00000535964 478 ntBASIC4.86□□□□□ -1.63
COL3A1P02461 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC4.86□□□□□ -1.63
COL3A1P02461 TRAV15-201ENST00000556680 249 ntBASIC4.86□□□□□ -1.63
COL3A1P02461 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC4.86□□□□□ -1.63
COL3A1P02461 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC4.86□□□□□ -1.63
COL3A1P02461 MIR3200-201ENST00000580767 85 ntBASIC4.86□□□□□ -1.63
COL3A1P02461 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC4.86□□□□□ -1.63
COL3A1P02461 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC4.86□□□□□ -1.63
COL3A1P02461 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
COL3A1P02461 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC4.86□□□□□ -1.63
COL3A1P02461 AC025449.1-201ENST00000603896 529 ntBASIC4.86□□□□□ -1.63
COL3A1P02461 AP001330.5-201ENST00000607176 411 ntBASIC4.86□□□□□ -1.63
COL3A1P02461 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC4.86□□□□□ -1.63
COL3A1P02461 AC015967.1-201ENST00000619893 476 ntBASIC4.86□□□□□ -1.63
COL3A1P02461 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC4.86□□□□□ -1.63
COL3A1P02461 AC099654.10-201ENST00000640395 161 ntBASIC4.86□□□□□ -1.63
COL3A1P02461 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL3A1P02461 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC4.86□□□□□ -1.63
COL3A1P02461 KPNA2P2-201ENST00000419546 1489 ntBASIC4.86□□□□□ -1.63
COL3A1P02461 AP000542.2-201ENST00000623199 6179 ntBASIC4.86□□□□□ -1.63
COL3A1P02461 LINC01362-202ENST00000452901 1712 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
COL3A1P02461 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
COL3A1P02461 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL3A1P02461 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.85□□□□□ -1.63
COL3A1P02461 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
COL3A1P02461 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL3A1P02461 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 140.5 ms