Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC2.8□□□□□ -1.96
TNFP01375 AC069277.1-205ENST00000432743 630 ntTSL 5 BASIC2.8□□□□□ -1.96
TNFP01375 RPL23AP22-201ENST00000437556 453 ntBASIC2.8□□□□□ -1.96
TNFP01375 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC2.8□□□□□ -1.96
TNFP01375 AC092185.1-201ENST00000491371 97 ntBASIC2.8□□□□□ -1.96
TNFP01375 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC2.8□□□□□ -1.96
TNFP01375 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.8□□□□□ -1.96
TNFP01375 RN7SKP43-201ENST00000516173 320 ntBASIC2.8□□□□□ -1.96
TNFP01375 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC2.8□□□□□ -1.96
TNFP01375 AC027309.2-201ENST00000520566 192 ntBASIC2.8□□□□□ -1.96
TNFP01375 AC016993.1-201ENST00000547033 1258 ntTSL 3 BASIC2.8□□□□□ -1.96
TNFP01375 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC2.8□□□□□ -1.96
TNFP01375 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC2.8□□□□□ -1.96
TNFP01375 CYCSP39-201ENST00000565821 309 ntBASIC2.8□□□□□ -1.96
TNFP01375 MIR4513-201ENST00000581077 86 ntBASIC2.8□□□□□ -1.96
TNFP01375 AC006023.1-201ENST00000603944 259 ntBASIC2.8□□□□□ -1.96
TNFP01375 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC2.8□□□□□ -1.96
TNFP01375 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC2.8□□□□□ -1.96
TNFP01375 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC2.8□□□□□ -1.96
TNFP01375 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
TNFP01375 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.8□□□□□ -1.96
TNFP01375 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
TNFP01375 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
TNFP01375 AL353746.1-201ENST00000566293 6881 ntBASIC2.79□□□□□ -1.96
TNFP01375 MTCO1P8-201ENST00000416914 1523 ntBASIC2.79□□□□□ -1.96
TNFP01375 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
TNFP01375 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
TNFP01375 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
TNFP01375 DCAF13P3-201ENST00000561147 1334 ntBASIC2.79□□□□□ -1.96
TNFP01375 ANKRD36P1-201ENST00000344424 659 ntBASIC2.79□□□□□ -1.96
TNFP01375 MIR591-201ENST00000385290 95 ntBASIC2.79□□□□□ -1.96
TNFP01375 UBE2V1P2-201ENST00000397758 440 ntBASIC2.79□□□□□ -1.96
TNFP01375 RPL31P1-201ENST00000398116 372 ntBASIC2.79□□□□□ -1.96
TNFP01375 RPL31P52-201ENST00000407532 367 ntBASIC2.79□□□□□ -1.96
TNFP01375 RNA5SP184-201ENST00000411071 108 ntBASIC2.79□□□□□ -1.96
TNFP01375 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC2.79□□□□□ -1.96
TNFP01375 DUTP6-201ENST00000425573 462 ntBASIC2.79□□□□□ -1.96
TNFP01375 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.79□□□□□ -1.96
TNFP01375 AC112496.1-201ENST00000497961 562 ntTSL 5 BASIC2.79□□□□□ -1.96
TNFP01375 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC2.79□□□□□ -1.96
TNFP01375 SETP12-201ENST00000514068 805 ntBASIC2.79□□□□□ -1.96
TNFP01375 RN7SKP132-201ENST00000516001 208 ntBASIC2.79□□□□□ -1.96
TNFP01375 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC2.79□□□□□ -1.96
TNFP01375 IGHV3-76-201ENST00000522465 295 ntBASIC2.79□□□□□ -1.96
TNFP01375 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC2.79□□□□□ -1.96
TNFP01375 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC2.79□□□□□ -1.96
TNFP01375 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC2.79□□□□□ -1.96
TNFP01375 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC2.79□□□□□ -1.96
TNFP01375 RPL12P50-201ENST00000603116 116 ntBASIC2.79□□□□□ -1.96
TNFP01375 AC007423.1-201ENST00000605009 627 ntBASIC2.79□□□□□ -1.96
TNFP01375 ATP1B3P1-201ENST00000605365 821 ntBASIC2.79□□□□□ -1.96
TNFP01375 AC022509.4-201ENST00000621404 572 ntBASIC2.79□□□□□ -1.96
TNFP01375 AP003485.2-201ENST00000623636 610 ntBASIC2.79□□□□□ -1.96
TNFP01375 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC2.79□□□□□ -1.96
TNFP01375 AC016542.2-201ENST00000624201 619 ntBASIC2.79□□□□□ -1.96
TNFP01375 AC007256.1-201ENST00000392253 2765 ntBASIC2.79□□□□□ -1.96
TNFP01375 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
TNFP01375 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
TNFP01375 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
TNFP01375 AC025125.1-201ENST00000624743 1922 ntBASIC2.78□□□□□ -1.96
TNFP01375 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
TNFP01375 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
TNFP01375 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC2.78□□□□□ -1.96
TNFP01375 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
TNFP01375 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
TNFP01375 SNORA70E-201ENST00000384492 135 ntBASIC2.78□□□□□ -1.96
TNFP01375 MIR92A2-201ENST00000385299 75 ntBASIC2.78□□□□□ -1.96
TNFP01375 HMGB1P13-201ENST00000406019 642 ntBASIC2.78□□□□□ -1.96
TNFP01375 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC2.78□□□□□ -1.96
TNFP01375 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC2.78□□□□□ -1.96
TNFP01375 HSD52-202ENST00000436225 772 ntTSL 3 BASIC2.78□□□□□ -1.96
TNFP01375 RNU6-1218P-201ENST00000458990 108 ntBASIC2.78□□□□□ -1.96
TNFP01375 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC2.78□□□□□ -1.96
TNFP01375 AC068657.1-201ENST00000520807 306 ntBASIC2.78□□□□□ -1.96
TNFP01375 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC2.78□□□□□ -1.96
TNFP01375 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC2.78□□□□□ -1.96
TNFP01375 VN1R90P-201ENST00000595717 726 ntBASIC2.78□□□□□ -1.96
TNFP01375 AL035413.2-201ENST00000604801 525 ntBASIC2.78□□□□□ -1.96
TNFP01375 PLCE1P1-201ENST00000622094 305 ntBASIC2.78□□□□□ -1.96
TNFP01375 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC2.78□□□□□ -1.96
TNFP01375 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
TNFP01375 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
TNFP01375 CUL4AP1-201ENST00000514750 1863 ntBASIC2.77□□□□□ -1.97
TNFP01375 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.77□□□□□ -1.97
TNFP01375 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.77□□□□□ -1.97
TNFP01375 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC2.77□□□□□ -1.97
TNFP01375 DCAF13P1-201ENST00000495256 1330 ntBASIC2.77□□□□□ -1.97
TNFP01375 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC2.77□□□□□ -1.97
TNFP01375 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC2.77□□□□□ -1.97
TNFP01375 RNU1-35P-201ENST00000362782 153 ntBASIC2.77□□□□□ -1.97
TNFP01375 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC2.77□□□□□ -1.97
TNFP01375 MIR512-1-201ENST00000384913 84 ntBASIC2.77□□□□□ -1.97
TNFP01375 RPA3-203ENST00000401447 414 ntTSL 3 BASIC2.77□□□□□ -1.97
TNFP01375 HSPE1P26-201ENST00000405341 275 ntBASIC2.77□□□□□ -1.97
TNFP01375 AL583834.1-201ENST00000406943 343 ntBASIC2.77□□□□□ -1.97
TNFP01375 SNORA11.2-201ENST00000408318 127 ntBASIC2.77□□□□□ -1.97
TNFP01375 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC2.77□□□□□ -1.97
TNFP01375 USP9YP36-201ENST00000424581 829 ntBASIC2.77□□□□□ -1.97
TNFP01375 OR2AS1P-201ENST00000427827 319 ntBASIC2.77□□□□□ -1.97
TNFP01375 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.77□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms