Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 RN7SKP53-201ENST00000411337 315 ntBASIC5.23□□□□□ -1.57
CHMP4AQ9BY43 USP9YP31-201ENST00000431405 881 ntBASIC5.23□□□□□ -1.57
CHMP4AQ9BY43 MTND4LP10-201ENST00000435146 291 ntBASIC5.23□□□□□ -1.57
CHMP4AQ9BY43 SNRPEP4-201ENST00000435815 279 ntBASIC5.23□□□□□ -1.57
CHMP4AQ9BY43 GSTA7P-201ENST00000438425 448 ntBASIC5.23□□□□□ -1.57
CHMP4AQ9BY43 RPL21P89-201ENST00000444021 467 ntBASIC5.23□□□□□ -1.57
CHMP4AQ9BY43 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC5.23□□□□□ -1.57
CHMP4AQ9BY43 NDUFAF4P2-201ENST00000445374 520 ntBASIC5.23□□□□□ -1.57
CHMP4AQ9BY43 AF127577.1-201ENST00000446301 562 ntTSL 3 BASIC5.23□□□□□ -1.57
CHMP4AQ9BY43 AL445669.2-201ENST00000454425 421 ntBASIC5.23□□□□□ -1.57
CHMP4AQ9BY43 HMGB1P25-201ENST00000468402 607 ntBASIC5.23□□□□□ -1.57
CHMP4AQ9BY43 AC110792.1-201ENST00000491826 472 ntBASIC5.23□□□□□ -1.57
CHMP4AQ9BY43 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC5.23□□□□□ -1.57
CHMP4AQ9BY43 AC006390.1-201ENST00000508068 283 ntBASIC5.23□□□□□ -1.57
CHMP4AQ9BY43 AC109458.1-201ENST00000508858 316 ntBASIC5.23□□□□□ -1.57
CHMP4AQ9BY43 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
CHMP4AQ9BY43 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC5.23□□□□□ -1.57
CHMP4AQ9BY43 RNU6-1261P-201ENST00000517194 104 ntBASIC5.23□□□□□ -1.57
CHMP4AQ9BY43 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC5.23□□□□□ -1.57
CHMP4AQ9BY43 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
CHMP4AQ9BY43 IFITM8P-201ENST00000522529 394 ntBASIC5.23□□□□□ -1.57
CHMP4AQ9BY43 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC5.23□□□□□ -1.57
CHMP4AQ9BY43 NACA-211ENST00000548563 827 ntTSL 5 BASIC5.23□□□□□ -1.57
CHMP4AQ9BY43 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC5.23□□□□□ -1.57
CHMP4AQ9BY43 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC5.23□□□□□ -1.57
CHMP4AQ9BY43 AC087481.2-201ENST00000565492 330 ntBASIC5.23□□□□□ -1.57
CHMP4AQ9BY43 AC104662.1-201ENST00000604448 511 ntBASIC5.23□□□□□ -1.57
CHMP4AQ9BY43 AC080013.4-201ENST00000607624 649 ntBASIC5.23□□□□□ -1.57
CHMP4AQ9BY43 AC024941.1-201ENST00000612250 334 ntBASIC5.23□□□□□ -1.57
CHMP4AQ9BY43 MIR8058-201ENST00000615737 89 ntBASIC5.23□□□□□ -1.57
CHMP4AQ9BY43 AP000720.1-201ENST00000625091 483 ntBASIC5.23□□□□□ -1.57
CHMP4AQ9BY43 AC126544.2-201ENST00000625174 749 ntBASIC5.23□□□□□ -1.57
CHMP4AQ9BY43 MKKS-204ENST00000639674 192 ntBASIC5.23□□□□□ -1.57
CHMP4AQ9BY43 AP002001.2-201ENST00000529025 1469 ntBASIC5.23□□□□□ -1.57
CHMP4AQ9BY43 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC5.23□□□□□ -1.57
CHMP4AQ9BY43 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC5.23□□□□□ -1.57
CHMP4AQ9BY43 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CHMP4AQ9BY43 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CHMP4AQ9BY43 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC5.22□□□□□ -1.57
CHMP4AQ9BY43 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CHMP4AQ9BY43 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC5.22□□□□□ -1.57
CHMP4AQ9BY43 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
CHMP4AQ9BY43 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC5.22□□□□□ -1.57
CHMP4AQ9BY43 AC069282.1-201ENST00000411911 526 ntBASIC5.22□□□□□ -1.57
CHMP4AQ9BY43 PGBD4P8-201ENST00000412993 562 ntBASIC5.22□□□□□ -1.57
CHMP4AQ9BY43 MTND4P3-201ENST00000417829 541 ntBASIC5.22□□□□□ -1.57
CHMP4AQ9BY43 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC5.22□□□□□ -1.57
CHMP4AQ9BY43 AL117339.2-201ENST00000430475 180 ntBASIC5.22□□□□□ -1.57
CHMP4AQ9BY43 TRBV26OR9-2-201ENST00000432077 293 ntBASIC5.22□□□□□ -1.57
CHMP4AQ9BY43 AL590103.1-201ENST00000434488 307 ntBASIC5.22□□□□□ -1.57
CHMP4AQ9BY43 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CHMP4AQ9BY43 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC5.22□□□□□ -1.57
CHMP4AQ9BY43 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC5.22□□□□□ -1.57
CHMP4AQ9BY43 AC096751.1-202ENST00000502691 1067 ntBASIC5.22□□□□□ -1.57
CHMP4AQ9BY43 AC010460.2-201ENST00000509054 677 ntBASIC5.22□□□□□ -1.57
CHMP4AQ9BY43 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC5.22□□□□□ -1.57
CHMP4AQ9BY43 AC090502.2-201ENST00000549267 280 ntBASIC5.22□□□□□ -1.57
CHMP4AQ9BY43 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC5.22□□□□□ -1.57
CHMP4AQ9BY43 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC5.22□□□□□ -1.57
CHMP4AQ9BY43 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC5.22□□□□□ -1.57
CHMP4AQ9BY43 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC5.22□□□□□ -1.57
CHMP4AQ9BY43 AC022916.3-201ENST00000592961 742 ntBASIC5.22□□□□□ -1.57
CHMP4AQ9BY43 VN1R85P-201ENST00000601587 426 ntBASIC5.22□□□□□ -1.57
CHMP4AQ9BY43 AC064801.1-201ENST00000612025 407 ntBASIC5.22□□□□□ -1.57
CHMP4AQ9BY43 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC5.22□□□□□ -1.57
CHMP4AQ9BY43 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC5.22□□□□□ -1.57
CHMP4AQ9BY43 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC5.22□□□□□ -1.57
CHMP4AQ9BY43 AL645568.2-201ENST00000432815 1337 ntBASIC5.22□□□□□ -1.57
CHMP4AQ9BY43 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC5.21□□□□□ -1.57
CHMP4AQ9BY43 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC5.21□□□□□ -1.57
CHMP4AQ9BY43 RLIMP1-201ENST00000339626 1680 ntBASIC5.21□□□□□ -1.57
CHMP4AQ9BY43 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
CHMP4AQ9BY43 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC5.21□□□□□ -1.57
CHMP4AQ9BY43 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.57
CHMP4AQ9BY43 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC5.21□□□□□ -1.58
CHMP4AQ9BY43 RNU6-707P-201ENST00000364647 95 ntBASIC5.21□□□□□ -1.58
CHMP4AQ9BY43 MCTS2P-201ENST00000394552 546 ntBASIC5.21□□□□□ -1.58
CHMP4AQ9BY43 AL137014.1-201ENST00000420490 1226 ntBASIC5.21□□□□□ -1.58
CHMP4AQ9BY43 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
CHMP4AQ9BY43 AL358472.1-201ENST00000431295 329 ntBASIC5.21□□□□□ -1.58
CHMP4AQ9BY43 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC5.21□□□□□ -1.58
CHMP4AQ9BY43 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC5.21□□□□□ -1.58
CHMP4AQ9BY43 SSXP4-201ENST00000451349 245 ntBASIC5.21□□□□□ -1.58
CHMP4AQ9BY43 RNU6-27P-201ENST00000516146 107 ntBASIC5.21□□□□□ -1.58
CHMP4AQ9BY43 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC5.21□□□□□ -1.58
CHMP4AQ9BY43 AL163153.1-201ENST00000554223 283 ntBASIC5.21□□□□□ -1.58
CHMP4AQ9BY43 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC5.21□□□□□ -1.58
CHMP4AQ9BY43 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
CHMP4AQ9BY43 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC5.21□□□□□ -1.58
CHMP4AQ9BY43 AC011492.1-201ENST00000600023 315 ntBASIC5.21□□□□□ -1.58
CHMP4AQ9BY43 Z82195.1-201ENST00000604558 398 ntBASIC5.21□□□□□ -1.58
CHMP4AQ9BY43 AL031666.3-201ENST00000609320 1006 ntBASIC5.21□□□□□ -1.58
CHMP4AQ9BY43 AC005332.6-201ENST00000613178 446 ntBASIC5.21□□□□□ -1.58
CHMP4AQ9BY43 AL110115.1-201ENST00000614396 364 ntBASIC5.21□□□□□ -1.58
CHMP4AQ9BY43 AC090246.1-201ENST00000616499 426 ntBASIC5.21□□□□□ -1.58
CHMP4AQ9BY43 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
CHMP4AQ9BY43 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
CHMP4AQ9BY43 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
CHMP4AQ9BY43 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC5.21□□□□□ -1.58
CHMP4AQ9BY43 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms