Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 AC025574.2-201ENST00000615621 514 ntBASIC5.33□□□□□ -1.56
UBE3DQ7Z6J8 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC5.33□□□□□ -1.56
UBE3DQ7Z6J8 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC5.33□□□□□ -1.56
UBE3DQ7Z6J8 AC099494.2-201ENST00000623371 978 ntBASIC5.33□□□□□ -1.56
UBE3DQ7Z6J8 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.33□□□□□ -1.56
UBE3DQ7Z6J8 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
UBE3DQ7Z6J8 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC5.33□□□□□ -1.56
UBE3DQ7Z6J8 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.33□□□□□ -1.56
UBE3DQ7Z6J8 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
UBE3DQ7Z6J8 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
UBE3DQ7Z6J8 AL138713.1-201ENST00000624026 2130 ntBASIC5.33□□□□□ -1.56
UBE3DQ7Z6J8 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
UBE3DQ7Z6J8 AC002525.1-201ENST00000624392 1622 ntBASIC5.33□□□□□ -1.56
UBE3DQ7Z6J8 OR4F13P-202ENST00000560066 2054 ntBASIC5.33□□□□□ -1.56
UBE3DQ7Z6J8 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC5.33□□□□□ -1.56
UBE3DQ7Z6J8 AC009313.2-201ENST00000417893 1941 ntBASIC5.33□□□□□ -1.56
UBE3DQ7Z6J8 AL121839.2-201ENST00000565058 6943 ntBASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 AL606537.1-201ENST00000607258 2011 ntBASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 Y_RNA.28-201ENST00000362554 111 ntBASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 Y_RNA.112-201ENST00000363250 102 ntBASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 RNA5SP510-201ENST00000364697 99 ntBASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 CDC123-202ENST00000378900 933 ntTSL 5 BASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 RNU6-1226P-201ENST00000384317 107 ntBASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 AL359643.1-201ENST00000404109 423 ntBASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 SNORA11.5-201ENST00000408163 128 ntBASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 AC069218.2-201ENST00000411665 344 ntBASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 AL358176.3-201ENST00000420757 454 ntBASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 AC007161.1-204ENST00000423039 460 ntBASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 AC113412.1-201ENST00000425840 504 ntBASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 BRWD1P3-201ENST00000428816 390 ntBASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 RPS29P14-201ENST00000431518 171 ntBASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 AF228730.2-201ENST00000438784 848 ntBASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 AC016724.1-201ENST00000453215 421 ntBASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 CBX1P2-201ENST00000453841 458 ntBASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 NXT1P1-201ENST00000458481 316 ntBASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 RNU7-180P-201ENST00000459240 63 ntBASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 RNU6-1208P-201ENST00000459588 107 ntBASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 RPL35AP28-201ENST00000459730 331 ntBASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 AC079804.1-201ENST00000461922 436 ntBASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 PLGLA-201ENST00000465668 449 ntBASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 OARD1-211ENST00000480585 829 ntTSL 3 BASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 AC025164.1-201ENST00000496249 478 ntBASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 Y_RNA.654-201ENST00000497848 106 ntBASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 AP000889.2-201ENST00000532684 490 ntBASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 ASB8-202ENST00000535055 657 ntTSL 2 BASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 AC063950.1-201ENST00000552036 308 ntBASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 COX6CP3-201ENST00000580869 223 ntBASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 AC245389.1-201ENST00000605141 529 ntBASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 PACRG-210ENST00000611387 279 ntTSL 5 BASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 AC135068.12-201ENST00000637370 931 ntBASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 AC087516.1-201ENST00000561236 2428 ntBASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
UBE3DQ7Z6J8 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
UBE3DQ7Z6J8 DHX40P1-201ENST00000588725 1412 ntBASIC5.31□□□□□ -1.56
UBE3DQ7Z6J8 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
UBE3DQ7Z6J8 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.31□□□□□ -1.56
UBE3DQ7Z6J8 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC5.31□□□□□ -1.56
UBE3DQ7Z6J8 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
UBE3DQ7Z6J8 MTND4P14-201ENST00000435799 1354 ntBASIC5.31□□□□□ -1.56
UBE3DQ7Z6J8 ELL2P4-201ENST00000446870 1376 ntBASIC5.31□□□□□ -1.56
UBE3DQ7Z6J8 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
UBE3DQ7Z6J8 USP45-204ENST00000369233 2514 ntTSL 5 BASIC5.31□□□□□ -1.56
UBE3DQ7Z6J8 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
UBE3DQ7Z6J8 TAB3P1-202ENST00000452645 1634 ntBASIC5.31□□□□□ -1.56
UBE3DQ7Z6J8 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC5.31□□□□□ -1.56
UBE3DQ7Z6J8 SAGE4P-201ENST00000442271 3381 ntBASIC5.31□□□□□ -1.56
UBE3DQ7Z6J8 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 193.2 ms