Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.35□□□□□ -1.87
PKNOX1P55347 AC007496.3-201ENST00000624987 3443 ntBASIC3.35□□□□□ -1.87
PKNOX1P55347 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
PKNOX1P55347 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
PKNOX1P55347 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
PKNOX1P55347 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
PKNOX1P55347 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
PKNOX1P55347 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
PKNOX1P55347 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC3.35□□□□□ -1.87
PKNOX1P55347 AC093578.1-201ENST00000415219 368 ntBASIC3.35□□□□□ -1.87
PKNOX1P55347 AC017079.2-201ENST00000416102 485 ntBASIC3.35□□□□□ -1.87
PKNOX1P55347 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.35□□□□□ -1.87
PKNOX1P55347 AL035423.1-201ENST00000420331 213 ntBASIC3.35□□□□□ -1.87
PKNOX1P55347 GTF2IP23-201ENST00000423746 351 ntBASIC3.35□□□□□ -1.87
PKNOX1P55347 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.35□□□□□ -1.87
PKNOX1P55347 DEFB130D-201ENST00000426866 237 ntBASIC3.35□□□□□ -1.87
PKNOX1P55347 NEK4P1-201ENST00000433383 879 ntBASIC3.35□□□□□ -1.87
PKNOX1P55347 AC010881.1-201ENST00000433830 235 ntBASIC3.35□□□□□ -1.87
PKNOX1P55347 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.35□□□□□ -1.87
PKNOX1P55347 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.35□□□□□ -1.87
PKNOX1P55347 HSD52-202ENST00000436225 772 ntTSL 3 BASIC3.35□□□□□ -1.87
PKNOX1P55347 AC008264.1-201ENST00000447612 367 ntBASIC3.35□□□□□ -1.87
PKNOX1P55347 AC097262.1-201ENST00000452559 548 ntBASIC3.35□□□□□ -1.87
PKNOX1P55347 RPL21P18-201ENST00000469899 480 ntBASIC3.35□□□□□ -1.87
PKNOX1P55347 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC3.35□□□□□ -1.87
PKNOX1P55347 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC3.35□□□□□ -1.87
PKNOX1P55347 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC3.35□□□□□ -1.87
PKNOX1P55347 SNORA70.18-201ENST00000516696 98 ntBASIC3.35□□□□□ -1.87
PKNOX1P55347 RN7SKP289-201ENST00000517244 295 ntBASIC3.35□□□□□ -1.87
PKNOX1P55347 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC3.35□□□□□ -1.87
PKNOX1P55347 RGS4-207ENST00000527809 817 ntTSL 4 BASIC3.35□□□□□ -1.87
PKNOX1P55347 AC004024.1-201ENST00000549244 247 ntBASIC3.35□□□□□ -1.87
PKNOX1P55347 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC3.35□□□□□ -1.87
PKNOX1P55347 AC093510.2-201ENST00000562820 896 ntBASIC3.35□□□□□ -1.87
PKNOX1P55347 MIR4504-201ENST00000577413 92 ntBASIC3.35□□□□□ -1.87
PKNOX1P55347 AC090616.5-202ENST00000582111 297 ntBASIC3.35□□□□□ -1.87
PKNOX1P55347 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC3.35□□□□□ -1.87
PKNOX1P55347 AC067959.1-201ENST00000604334 379 ntBASIC3.35□□□□□ -1.87
PKNOX1P55347 AC009948.4-201ENST00000604692 675 ntBASIC3.35□□□□□ -1.87
PKNOX1P55347 AP004247.3-201ENST00000608682 624 ntBASIC3.35□□□□□ -1.87
PKNOX1P55347 AC099676.1-201ENST00000608886 657 ntBASIC3.35□□□□□ -1.87
PKNOX1P55347 AL136295.6-201ENST00000610486 658 ntBASIC3.35□□□□□ -1.87
PKNOX1P55347 AL450489.1-201ENST00000612071 468 ntBASIC3.35□□□□□ -1.87
PKNOX1P55347 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC3.35□□□□□ -1.87
PKNOX1P55347 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.35□□□□□ -1.87
PKNOX1P55347 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
PKNOX1P55347 ZNF542P-204ENST00000482727 1305 ntBASIC3.35□□□□□ -1.87
PKNOX1P55347 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
PKNOX1P55347 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.35□□□□□ -1.87
PKNOX1P55347 AL157700.1-201ENST00000561973 1432 ntBASIC3.35□□□□□ -1.87
PKNOX1P55347 FER-202ENST00000438717 1531 ntTSL 2 BASIC3.34□□□□□ -1.87
PKNOX1P55347 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.34□□□□□ -1.87
PKNOX1P55347 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.34□□□□□ -1.87
PKNOX1P55347 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
PKNOX1P55347 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
PKNOX1P55347 RN7SKP227-201ENST00000364445 330 ntBASIC3.34□□□□□ -1.87
PKNOX1P55347 SNORD3H-201ENST00000384486 214 ntBASIC3.34□□□□□ -1.87
PKNOX1P55347 EIF5P1-201ENST00000400019 1231 ntBASIC3.34□□□□□ -1.87
PKNOX1P55347 AL355379.1-201ENST00000405542 640 ntBASIC3.34□□□□□ -1.87
PKNOX1P55347 RN7SKP111-201ENST00000410349 271 ntBASIC3.34□□□□□ -1.87
PKNOX1P55347 AC126124.2-201ENST00000413542 321 ntBASIC3.34□□□□□ -1.87
PKNOX1P55347 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC3.34□□□□□ -1.87
PKNOX1P55347 DBIP2-201ENST00000419076 262 ntBASIC3.34□□□□□ -1.87
PKNOX1P55347 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
PKNOX1P55347 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC3.34□□□□□ -1.87
PKNOX1P55347 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC3.34□□□□□ -1.87
PKNOX1P55347 CYCSP4-201ENST00000429682 331 ntBASIC3.34□□□□□ -1.87
PKNOX1P55347 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC3.34□□□□□ -1.87
PKNOX1P55347 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC3.34□□□□□ -1.87
PKNOX1P55347 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC3.34□□□□□ -1.87
PKNOX1P55347 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC3.34□□□□□ -1.87
PKNOX1P55347 NOTCH2P1-201ENST00000443481 624 ntBASIC3.34□□□□□ -1.87
PKNOX1P55347 AC125238.1-201ENST00000448842 249 ntBASIC3.34□□□□□ -1.87
PKNOX1P55347 OR51B8P-201ENST00000449892 769 ntBASIC3.34□□□□□ -1.87
PKNOX1P55347 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC3.34□□□□□ -1.87
PKNOX1P55347 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC3.34□□□□□ -1.87
PKNOX1P55347 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.34□□□□□ -1.87
PKNOX1P55347 RNU7-140P-201ENST00000459546 60 ntBASIC3.34□□□□□ -1.87
PKNOX1P55347 RN7SKP18-201ENST00000516005 275 ntBASIC3.34□□□□□ -1.87
PKNOX1P55347 SNORA64.4-201ENST00000516632 81 ntBASIC3.34□□□□□ -1.87
PKNOX1P55347 RNU6-467P-201ENST00000517027 110 ntBASIC3.34□□□□□ -1.87
PKNOX1P55347 AC104027.1-201ENST00000521887 300 ntBASIC3.34□□□□□ -1.87
PKNOX1P55347 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC3.34□□□□□ -1.87
PKNOX1P55347 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.34□□□□□ -1.87
PKNOX1P55347 AC037471.2-201ENST00000564941 598 ntBASIC3.34□□□□□ -1.87
PKNOX1P55347 MTCO1P40-201ENST00000574371 625 ntBASIC3.34□□□□□ -1.87
PKNOX1P55347 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.34□□□□□ -1.87
PKNOX1P55347 AC006557.5-201ENST00000603126 811 ntBASIC3.34□□□□□ -1.87
PKNOX1P55347 AC016542.1-201ENST00000608259 493 ntBASIC3.34□□□□□ -1.87
PKNOX1P55347 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC3.34□□□□□ -1.87
PKNOX1P55347 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC3.34□□□□□ -1.87
PKNOX1P55347 SNORA50A-202ENST00000629536 136 ntBASIC3.34□□□□□ -1.87
PKNOX1P55347 ELL2P4-201ENST00000446870 1376 ntBASIC3.34□□□□□ -1.88
PKNOX1P55347 AC021755.1-201ENST00000559747 1447 ntBASIC3.34□□□□□ -1.88
PKNOX1P55347 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.88
PKNOX1P55347 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
PKNOX1P55347 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
PKNOX1P55347 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
PKNOX1P55347 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
PKNOX1P55347 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 153.7 ms