Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC004801.2-202ENST00000463559 283 ntBASIC4.16□□□□□ -1.74
MSH6P52701 HSPE1P6-201ENST00000479457 291 ntBASIC4.16□□□□□ -1.74
MSH6P52701 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
MSH6P52701 EEF1A1P37-201ENST00000522748 715 ntBASIC4.16□□□□□ -1.74
MSH6P52701 AC107016.2-201ENST00000547968 190 ntBASIC4.16□□□□□ -1.74
MSH6P52701 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC4.16□□□□□ -1.74
MSH6P52701 AL365503.1-201ENST00000605247 905 ntBASIC4.16□□□□□ -1.74
MSH6P52701 OR6R2P-201ENST00000609216 300 ntBASIC4.16□□□□□ -1.74
MSH6P52701 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
MSH6P52701 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC4.16□□□□□ -1.74
MSH6P52701 AC021755.1-201ENST00000559747 1447 ntBASIC4.16□□□□□ -1.74
MSH6P52701 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
MSH6P52701 RNU6-984P-201ENST00000363236 109 ntBASIC4.15□□□□□ -1.74
MSH6P52701 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
MSH6P52701 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
MSH6P52701 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC4.15□□□□□ -1.74
MSH6P52701 MTND4LP13-201ENST00000425022 298 ntBASIC4.15□□□□□ -1.74
MSH6P52701 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC4.15□□□□□ -1.74
MSH6P52701 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC4.15□□□□□ -1.74
MSH6P52701 LARP7P4-201ENST00000481075 878 ntBASIC4.15□□□□□ -1.74
MSH6P52701 METTL15P1-201ENST00000481421 1045 ntBASIC4.15□□□□□ -1.74
MSH6P52701 MTND3P6-201ENST00000485242 339 ntBASIC4.15□□□□□ -1.74
MSH6P52701 AC104687.1-201ENST00000485829 412 ntBASIC4.15□□□□□ -1.74
MSH6P52701 AC008413.1-201ENST00000511864 177 ntBASIC4.15□□□□□ -1.74
MSH6P52701 AP001636.2-201ENST00000525517 696 ntBASIC4.15□□□□□ -1.74
MSH6P52701 HMGB3P26-201ENST00000560051 582 ntBASIC4.15□□□□□ -1.74
MSH6P52701 AC234778.2-201ENST00000566241 354 ntBASIC4.15□□□□□ -1.74
MSH6P52701 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC4.15□□□□□ -1.74
MSH6P52701 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC4.15□□□□□ -1.74
MSH6P52701 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
MSH6P52701 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
MSH6P52701 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
MSH6P52701 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
MSH6P52701 AL360182.1-201ENST00000397433 468 ntBASIC4.14□□□□□ -1.75
MSH6P52701 RNU6-564P-201ENST00000410983 104 ntBASIC4.14□□□□□ -1.75
MSH6P52701 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC4.14□□□□□ -1.75
MSH6P52701 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC4.14□□□□□ -1.75
MSH6P52701 TOMM20P4-201ENST00000427861 435 ntBASIC4.14□□□□□ -1.75
MSH6P52701 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
MSH6P52701 RAD1P2-201ENST00000446414 663 ntBASIC4.14□□□□□ -1.75
MSH6P52701 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC4.14□□□□□ -1.75
MSH6P52701 AC010401.1-201ENST00000463867 348 ntBASIC4.14□□□□□ -1.75
MSH6P52701 RPS20P22-201ENST00000473700 357 ntBASIC4.14□□□□□ -1.75
MSH6P52701 AP002812.4-201ENST00000532139 286 ntBASIC4.14□□□□□ -1.75
MSH6P52701 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC4.14□□□□□ -1.75
MSH6P52701 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC4.14□□□□□ -1.75
MSH6P52701 AC023813.4-201ENST00000607580 580 ntBASIC4.14□□□□□ -1.75
MSH6P52701 RMST_5.1-201ENST00000618704 126 ntBASIC4.14□□□□□ -1.75
MSH6P52701 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
MSH6P52701 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
MSH6P52701 RNA5SP31-201ENST00000411144 127 ntBASIC4.14□□□□□ -1.75
MSH6P52701 NPM1P24-201ENST00000428039 894 ntBASIC4.14□□□□□ -1.75
MSH6P52701 ARL5AP4-201ENST00000430731 512 ntBASIC4.14□□□□□ -1.75
MSH6P52701 EXTL2P1-201ENST00000446218 416 ntBASIC4.14□□□□□ -1.75
MSH6P52701 ATG10-AS1-201ENST00000504846 648 ntBASIC4.14□□□□□ -1.75
MSH6P52701 RNA5SP24-201ENST00000516478 95 ntBASIC4.14□□□□□ -1.75
MSH6P52701 RN7SKP60-201ENST00000516985 239 ntBASIC4.14□□□□□ -1.75
MSH6P52701 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC4.14□□□□□ -1.75
MSH6P52701 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC4.14□□□□□ -1.75
MSH6P52701 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC4.14□□□□□ -1.75
MSH6P52701 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC4.14□□□□□ -1.75
MSH6P52701 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
MSH6P52701 AC007496.3-201ENST00000624987 3443 ntBASIC4.13□□□□□ -1.75
MSH6P52701 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC4.13□□□□□ -1.75
MSH6P52701 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
MSH6P52701 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC4.13□□□□□ -1.75
MSH6P52701 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
MSH6P52701 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
MSH6P52701 RNU6-859P-201ENST00000362728 107 ntBASIC4.13□□□□□ -1.75
MSH6P52701 RNU6-1251P-201ENST00000364502 107 ntBASIC4.13□□□□□ -1.75
MSH6P52701 MRPL50P2-201ENST00000416821 482 ntBASIC4.13□□□□□ -1.75
MSH6P52701 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC4.13□□□□□ -1.75
MSH6P52701 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC4.13□□□□□ -1.75
MSH6P52701 RFESDP1-201ENST00000422350 461 ntBASIC4.13□□□□□ -1.75
MSH6P52701 AL445528.1-201ENST00000426330 420 ntBASIC4.13□□□□□ -1.75
MSH6P52701 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC4.13□□□□□ -1.75
MSH6P52701 AC069277.2-201ENST00000454211 432 ntBASIC4.13□□□□□ -1.75
MSH6P52701 RNU6-551P-201ENST00000516661 103 ntBASIC4.13□□□□□ -1.75
MSH6P52701 RNU4ATAC3P-201ENST00000516699 126 ntBASIC4.13□□□□□ -1.75
MSH6P52701 AP002770.2-201ENST00000543613 532 ntBASIC4.13□□□□□ -1.75
MSH6P52701 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC4.13□□□□□ -1.75
MSH6P52701 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC4.13□□□□□ -1.75
MSH6P52701 IGKV1OR2-6-201ENST00000603485 277 ntBASIC4.13□□□□□ -1.75
MSH6P52701 AL592295.2-201ENST00000612578 206 ntBASIC4.13□□□□□ -1.75
MSH6P52701 AC064859.1-201ENST00000624741 174 ntBASIC4.13□□□□□ -1.75
MSH6P52701 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC4.13□□□□□ -1.75
MSH6P52701 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
MSH6P52701 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
MSH6P52701 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.12□□□□□ -1.75
MSH6P52701 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.12□□□□□ -1.75
MSH6P52701 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC4.12□□□□□ -1.75
MSH6P52701 SAGE4P-201ENST00000442271 3381 ntBASIC4.12□□□□□ -1.75
MSH6P52701 AC007342.7-201ENST00000624610 2337 ntBASIC4.12□□□□□ -1.75
MSH6P52701 MTCYBP7-201ENST00000419540 1134 ntBASIC4.12□□□□□ -1.75
MSH6P52701 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC4.12□□□□□ -1.75
MSH6P52701 XKRYP6-201ENST00000440468 1116 ntBASIC4.12□□□□□ -1.75
MSH6P52701 XKRYP3-201ENST00000442113 1116 ntBASIC4.12□□□□□ -1.75
MSH6P52701 AC099063.2-201ENST00000446360 662 ntBASIC4.12□□□□□ -1.75
MSH6P52701 HMGB3P8-201ENST00000449709 577 ntBASIC4.12□□□□□ -1.75
MSH6P52701 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms