Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC2.83□□□□□ -1.96
COL6A3P12111 RPL12P25-201ENST00000455592 494 ntBASIC2.83□□□□□ -1.96
COL6A3P12111 AC068587.2-201ENST00000478386 781 ntBASIC2.83□□□□□ -1.96
COL6A3P12111 GNAI2P1-201ENST00000541815 315 ntBASIC2.83□□□□□ -1.96
COL6A3P12111 AC010928.3-201ENST00000587712 541 ntBASIC2.83□□□□□ -1.96
COL6A3P12111 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC2.83□□□□□ -1.96
COL6A3P12111 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC2.82□□□□□ -1.96
COL6A3P12111 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC2.82□□□□□ -1.96
COL6A3P12111 SKP1P1-201ENST00000438081 489 ntBASIC2.82□□□□□ -1.96
COL6A3P12111 RPL30P9-201ENST00000465586 330 ntBASIC2.82□□□□□ -1.96
COL6A3P12111 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
COL6A3P12111 MYL12AP1-201ENST00000518490 515 ntBASIC2.82□□□□□ -1.96
COL6A3P12111 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.82□□□□□ -1.96
COL6A3P12111 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
COL6A3P12111 AL359893.1-201ENST00000447628 1580 ntBASIC2.82□□□□□ -1.96
COL6A3P12111 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC2.82□□□□□ -1.96
COL6A3P12111 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC2.82□□□□□ -1.96
COL6A3P12111 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
COL6A3P12111 IFNNP1-201ENST00000429219 553 ntBASIC2.82□□□□□ -1.96
COL6A3P12111 ATP5J2P3-201ENST00000451550 258 ntBASIC2.82□□□□□ -1.96
COL6A3P12111 AC107222.1-201ENST00000510899 637 ntBASIC2.82□□□□□ -1.96
COL6A3P12111 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC2.82□□□□□ -1.96
COL6A3P12111 RNA5SP320-201ENST00000516263 124 ntBASIC2.82□□□□□ -1.96
COL6A3P12111 AC009101.1-201ENST00000568135 242 ntBASIC2.82□□□□□ -1.96
COL6A3P12111 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
COL6A3P12111 MAPK10-320ENST00000641462 6696 ntBASIC2.82□□□□□ -1.96
COL6A3P12111 MTND5P28-201ENST00000438005 1594 ntBASIC2.82□□□□□ -1.96
COL6A3P12111 MIR518C-201ENST00000384822 101 ntBASIC2.82□□□□□ -1.96
COL6A3P12111 AL121834.1-202ENST00000404494 277 ntBASIC2.82□□□□□ -1.96
COL6A3P12111 HSPE1P8-201ENST00000406997 288 ntBASIC2.82□□□□□ -1.96
COL6A3P12111 BTG3P1-201ENST00000435859 716 ntBASIC2.82□□□□□ -1.96
COL6A3P12111 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.82□□□□□ -1.96
COL6A3P12111 AC107398.1-201ENST00000486904 505 ntBASIC2.82□□□□□ -1.96
COL6A3P12111 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC2.82□□□□□ -1.96
COL6A3P12111 AC068313.1-201ENST00000604028 1008 ntBASIC2.82□□□□□ -1.96
COL6A3P12111 AC079298.2-201ENST00000623885 459 ntBASIC2.82□□□□□ -1.96
COL6A3P12111 AC000123.3-201ENST00000624029 4975 ntBASIC2.81□□□□□ -1.96
COL6A3P12111 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC2.81□□□□□ -1.96
COL6A3P12111 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
COL6A3P12111 GABRG2-229ENST00000641017 3628 ntBASIC2.81□□□□□ -1.96
COL6A3P12111 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC2.81□□□□□ -1.96
COL6A3P12111 Z82205.1-201ENST00000428456 297 ntBASIC2.81□□□□□ -1.96
COL6A3P12111 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC2.81□□□□□ -1.96
COL6A3P12111 MRPS31P2-201ENST00000451581 518 ntBASIC2.81□□□□□ -1.96
COL6A3P12111 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC2.81□□□□□ -1.96
COL6A3P12111 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC2.81□□□□□ -1.96
COL6A3P12111 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC2.81□□□□□ -1.96
COL6A3P12111 AP004247.3-201ENST00000608682 624 ntBASIC2.81□□□□□ -1.96
COL6A3P12111 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
COL6A3P12111 Z82209.1-201ENST00000422141 2135 ntBASIC2.81□□□□□ -1.96
COL6A3P12111 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
COL6A3P12111 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
COL6A3P12111 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC2.81□□□□□ -1.96
COL6A3P12111 MOB1AP2-201ENST00000446060 614 ntBASIC2.81□□□□□ -1.96
COL6A3P12111 HMGN1P5-201ENST00000448591 263 ntBASIC2.81□□□□□ -1.96
COL6A3P12111 AL590639.1-201ENST00000456484 337 ntBASIC2.81□□□□□ -1.96
COL6A3P12111 SCGB1D5P-201ENST00000515134 247 ntBASIC2.81□□□□□ -1.96
COL6A3P12111 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC2.81□□□□□ -1.96
COL6A3P12111 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC2.81□□□□□ -1.96
COL6A3P12111 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC2.8□□□□□ -1.96
COL6A3P12111 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC2.8□□□□□ -1.96
COL6A3P12111 RNU1-17P-201ENST00000363022 152 ntBASIC2.8□□□□□ -1.96
COL6A3P12111 AC108667.1-201ENST00000428618 249 ntBASIC2.8□□□□□ -1.96
COL6A3P12111 SYT14P1-201ENST00000481459 721 ntBASIC2.8□□□□□ -1.96
COL6A3P12111 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC2.8□□□□□ -1.96
COL6A3P12111 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC2.8□□□□□ -1.96
COL6A3P12111 MTHFD2P4-201ENST00000515074 1025 ntBASIC2.8□□□□□ -1.96
COL6A3P12111 AC018555.1-201ENST00000567548 1980 ntBASIC2.8□□□□□ -1.96
COL6A3P12111 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC2.8□□□□□ -1.96
COL6A3P12111 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
COL6A3P12111 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
COL6A3P12111 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC2.8□□□□□ -1.96
COL6A3P12111 MIR337-201ENST00000362281 93 ntBASIC2.8□□□□□ -1.96
COL6A3P12111 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC2.8□□□□□ -1.96
COL6A3P12111 RN7SL93P-201ENST00000463035 293 ntBASIC2.8□□□□□ -1.96
COL6A3P12111 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC2.8□□□□□ -1.96
COL6A3P12111 AC007621.1-201ENST00000604544 437 ntBASIC2.8□□□□□ -1.96
COL6A3P12111 AC107871.2-201ENST00000612894 502 ntBASIC2.8□□□□□ -1.96
COL6A3P12111 AC074276.2-201ENST00000619891 348 ntBASIC2.8□□□□□ -1.96
COL6A3P12111 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC2.8□□□□□ -1.96
COL6A3P12111 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC2.8□□□□□ -1.96
COL6A3P12111 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC2.8□□□□□ -1.96
COL6A3P12111 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC2.8□□□□□ -1.96
COL6A3P12111 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC2.8□□□□□ -1.96
COL6A3P12111 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
COL6A3P12111 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC2.79□□□□□ -1.96
COL6A3P12111 RPL5P16-201ENST00000471467 790 ntBASIC2.79□□□□□ -1.96
COL6A3P12111 AC108078.2-201ENST00000510750 236 ntBASIC2.79□□□□□ -1.96
COL6A3P12111 HMGB1P19-201ENST00000517578 577 ntBASIC2.79□□□□□ -1.96
COL6A3P12111 AL391156.1-201ENST00000554965 554 ntBASIC2.79□□□□□ -1.96
COL6A3P12111 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC2.79□□□□□ -1.96
COL6A3P12111 BNIP3P38-201ENST00000601117 544 ntBASIC2.79□□□□□ -1.96
COL6A3P12111 AC009039.2-201ENST00000624524 529 ntBASIC2.79□□□□□ -1.96
COL6A3P12111 RALGAPA1P1-201ENST00000443361 6232 ntBASIC2.79□□□□□ -1.96
COL6A3P12111 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC2.79□□□□□ -1.96
COL6A3P12111 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
COL6A3P12111 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
COL6A3P12111 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC2.79□□□□□ -1.96
COL6A3P12111 RPS20P5-201ENST00000434808 360 ntBASIC2.79□□□□□ -1.96
COL6A3P12111 AC010307.1-201ENST00000467206 836 ntBASIC2.79□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 137.5 ms