Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 DEFB109F-201ENST00000491870 277 ntBASIC5.35□□□□□ -1.55
HMGB1P09429 AC231760.1-201ENST00000498002 260 ntBASIC5.35□□□□□ -1.55
HMGB1P09429 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC5.35□□□□□ -1.55
HMGB1P09429 ARL2BPP6-201ENST00000512757 439 ntBASIC5.35□□□□□ -1.55
HMGB1P09429 RNA5SP464-201ENST00000516251 108 ntBASIC5.35□□□□□ -1.55
HMGB1P09429 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC5.35□□□□□ -1.55
HMGB1P09429 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC5.35□□□□□ -1.55
HMGB1P09429 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC5.35□□□□□ -1.55
HMGB1P09429 AP000827.1-201ENST00000527814 258 ntBASIC5.35□□□□□ -1.55
HMGB1P09429 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
HMGB1P09429 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC5.35□□□□□ -1.55
HMGB1P09429 AC011451.2-201ENST00000604303 598 ntBASIC5.35□□□□□ -1.55
HMGB1P09429 AC008962.1-201ENST00000605729 304 ntBASIC5.35□□□□□ -1.55
HMGB1P09429 AP003392.5-201ENST00000607857 415 ntBASIC5.35□□□□□ -1.55
HMGB1P09429 AL050303.3-201ENST00000613704 284 ntBASIC5.35□□□□□ -1.55
HMGB1P09429 MIR6780A-201ENST00000615089 68 ntBASIC5.35□□□□□ -1.55
HMGB1P09429 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC5.35□□□□□ -1.55
HMGB1P09429 AC079228.1-201ENST00000624774 1049 ntBASIC5.35□□□□□ -1.55
HMGB1P09429 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC5.35□□□□□ -1.55
HMGB1P09429 SUPT16HP1-201ENST00000537175 3133 ntBASIC5.35□□□□□ -1.55
HMGB1P09429 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC5.35□□□□□ -1.55
HMGB1P09429 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
HMGB1P09429 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
HMGB1P09429 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC5.35□□□□□ -1.55
HMGB1P09429 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
HMGB1P09429 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC5.35□□□□□ -1.55
HMGB1P09429 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC5.35□□□□□ -1.55
HMGB1P09429 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
HMGB1P09429 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
HMGB1P09429 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
HMGB1P09429 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC5.34□□□□□ -1.55
HMGB1P09429 SNORD113.2-201ENST00000364166 89 ntBASIC5.34□□□□□ -1.55
HMGB1P09429 RNU1-63P-201ENST00000383902 164 ntBASIC5.34□□□□□ -1.55
HMGB1P09429 MIR493-201ENST00000385254 89 ntBASIC5.34□□□□□ -1.55
HMGB1P09429 RNA5SP372-201ENST00000390836 115 ntBASIC5.34□□□□□ -1.55
HMGB1P09429 CCDC58P2-201ENST00000417131 366 ntBASIC5.34□□□□□ -1.55
HMGB1P09429 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC5.34□□□□□ -1.55
HMGB1P09429 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC5.34□□□□□ -1.55
HMGB1P09429 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC5.34□□□□□ -1.55
HMGB1P09429 AC073143.1-201ENST00000436316 395 ntBASIC5.34□□□□□ -1.55
HMGB1P09429 RPL23AP93-201ENST00000440847 484 ntBASIC5.34□□□□□ -1.55
HMGB1P09429 CR769776.1-201ENST00000441254 787 ntBASIC5.34□□□□□ -1.55
HMGB1P09429 AL513533.1-201ENST00000453728 415 ntBASIC5.34□□□□□ -1.55
HMGB1P09429 ERHP1-201ENST00000523006 310 ntBASIC5.34□□□□□ -1.55
HMGB1P09429 AC022690.1-201ENST00000526681 550 ntBASIC5.34□□□□□ -1.55
HMGB1P09429 HSPE1P5-201ENST00000561489 272 ntBASIC5.34□□□□□ -1.55
HMGB1P09429 AP002826.1-201ENST00000608835 315 ntBASIC5.34□□□□□ -1.55
HMGB1P09429 AC068831.7-201ENST00000616954 363 ntBASIC5.34□□□□□ -1.55
HMGB1P09429 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC5.34□□□□□ -1.55
HMGB1P09429 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC5.34□□□□□ -1.55
HMGB1P09429 MFSD8-242ENST00000641690 4199 ntBASIC5.34□□□□□ -1.56
HMGB1P09429 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC5.33□□□□□ -1.56
HMGB1P09429 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
HMGB1P09429 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC5.33□□□□□ -1.56
HMGB1P09429 MIR513B-201ENST00000385136 84 ntBASIC5.33□□□□□ -1.56
HMGB1P09429 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC5.33□□□□□ -1.56
HMGB1P09429 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC5.33□□□□□ -1.56
HMGB1P09429 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC5.33□□□□□ -1.56
HMGB1P09429 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC5.33□□□□□ -1.56
HMGB1P09429 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC5.33□□□□□ -1.56
HMGB1P09429 SNRPEP7-201ENST00000438350 220 ntBASIC5.33□□□□□ -1.56
HMGB1P09429 EEF1E1P1-201ENST00000446998 430 ntBASIC5.33□□□□□ -1.56
HMGB1P09429 OR6K5P-201ENST00000447050 945 ntBASIC5.33□□□□□ -1.56
HMGB1P09429 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
HMGB1P09429 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
HMGB1P09429 RPL12P20-201ENST00000475538 479 ntBASIC5.33□□□□□ -1.56
HMGB1P09429 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC5.33□□□□□ -1.56
HMGB1P09429 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC5.33□□□□□ -1.56
HMGB1P09429 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC5.33□□□□□ -1.56
HMGB1P09429 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC5.33□□□□□ -1.56
HMGB1P09429 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC5.33□□□□□ -1.56
HMGB1P09429 SLC25A36P1-201ENST00000590111 465 ntBASIC5.33□□□□□ -1.56
HMGB1P09429 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC5.33□□□□□ -1.56
HMGB1P09429 AC090181.2-201ENST00000602975 672 ntBASIC5.33□□□□□ -1.56
HMGB1P09429 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC5.33□□□□□ -1.56
HMGB1P09429 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC5.33□□□□□ -1.56
HMGB1P09429 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC5.33□□□□□ -1.56
HMGB1P09429 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC5.33□□□□□ -1.56
HMGB1P09429 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC5.33□□□□□ -1.56
HMGB1P09429 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
HMGB1P09429 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
HMGB1P09429 MFSD4BP1-201ENST00000513330 1552 ntBASIC5.33□□□□□ -1.56
HMGB1P09429 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
HMGB1P09429 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC5.32□□□□□ -1.56
HMGB1P09429 AC091152.2-201ENST00000591628 2569 ntBASIC5.32□□□□□ -1.56
HMGB1P09429 RPL7P26-201ENST00000333817 754 ntBASIC5.32□□□□□ -1.56
HMGB1P09429 AL161781.1-201ENST00000354277 403 ntBASIC5.32□□□□□ -1.56
HMGB1P09429 RNA5SP307-201ENST00000362863 116 ntBASIC5.32□□□□□ -1.56
HMGB1P09429 RNU1-44P-201ENST00000384453 163 ntBASIC5.32□□□□□ -1.56
HMGB1P09429 RNU6-757P-201ENST00000410334 100 ntBASIC5.32□□□□□ -1.56
HMGB1P09429 UBTFL3-201ENST00000418934 1024 ntBASIC5.32□□□□□ -1.56
HMGB1P09429 RPL21P32-201ENST00000419877 477 ntBASIC5.32□□□□□ -1.56
HMGB1P09429 RPS12P10-201ENST00000427031 377 ntBASIC5.32□□□□□ -1.56
HMGB1P09429 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
HMGB1P09429 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC5.32□□□□□ -1.56
HMGB1P09429 RPL23AP43-201ENST00000446445 471 ntBASIC5.32□□□□□ -1.56
HMGB1P09429 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC5.32□□□□□ -1.56
HMGB1P09429 MTND1P31-201ENST00000449206 961 ntBASIC5.32□□□□□ -1.56
HMGB1P09429 RPS11P1-201ENST00000451072 473 ntBASIC5.32□□□□□ -1.56
HMGB1P09429 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC5.32□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms