Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC068057.2-201ENST00000624047 895 ntBASIC3.58□□□□□ -1.84
HOXD4P09016 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXD4P09016 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC3.58□□□□□ -1.84
HOXD4P09016 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
HOXD4P09016 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
HOXD4P09016 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC3.58□□□□□ -1.84
HOXD4P09016 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
HOXD4P09016 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
HOXD4P09016 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
HOXD4P09016 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
HOXD4P09016 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.58□□□□□ -1.84
HOXD4P09016 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.57□□□□□ -1.84
HOXD4P09016 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
HOXD4P09016 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
HOXD4P09016 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
HOXD4P09016 MAPK10-373ENST00000641983 6772 ntBASIC3.57□□□□□ -1.84
HOXD4P09016 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
HOXD4P09016 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
HOXD4P09016 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
HOXD4P09016 OR52E6-202ENST00000379946 954 ntBASIC3.57□□□□□ -1.84
HOXD4P09016 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC3.57□□□□□ -1.84
HOXD4P09016 MIR525-201ENST00000384978 85 ntBASIC3.57□□□□□ -1.84
HOXD4P09016 HMGN2P8-201ENST00000391458 268 ntBASIC3.57□□□□□ -1.84
HOXD4P09016 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC3.57□□□□□ -1.84
HOXD4P09016 RN7SKP177-201ENST00000410567 355 ntBASIC3.57□□□□□ -1.84
HOXD4P09016 PGBD4P8-201ENST00000412993 562 ntBASIC3.57□□□□□ -1.84
HOXD4P09016 AC114814.2-201ENST00000419195 485 ntBASIC3.57□□□□□ -1.84
HOXD4P09016 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC3.57□□□□□ -1.84
HOXD4P09016 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC3.57□□□□□ -1.84
HOXD4P09016 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC3.57□□□□□ -1.84
HOXD4P09016 MTCYBP31-201ENST00000438855 1122 ntBASIC3.57□□□□□ -1.84
HOXD4P09016 NPM1P13-201ENST00000452663 865 ntBASIC3.57□□□□□ -1.84
HOXD4P09016 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.57□□□□□ -1.84
HOXD4P09016 RPS20P21-201ENST00000466859 343 ntBASIC3.57□□□□□ -1.84
HOXD4P09016 MTCO1P6-201ENST00000481192 1384 ntBASIC3.57□□□□□ -1.84
HOXD4P09016 RPL23AP44-201ENST00000482216 473 ntBASIC3.57□□□□□ -1.84
HOXD4P09016 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
HOXD4P09016 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC3.57□□□□□ -1.84
HOXD4P09016 AL035404.1-201ENST00000497982 568 ntBASIC3.57□□□□□ -1.84
HOXD4P09016 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.57□□□□□ -1.84
HOXD4P09016 AC093534.1-201ENST00000504977 132 ntBASIC3.57□□□□□ -1.84
HOXD4P09016 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC3.57□□□□□ -1.84
HOXD4P09016 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC3.57□□□□□ -1.84
HOXD4P09016 AC005798.1-201ENST00000513715 387 ntBASIC3.57□□□□□ -1.84
HOXD4P09016 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC3.57□□□□□ -1.84
HOXD4P09016 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC3.57□□□□□ -1.84
HOXD4P09016 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC3.57□□□□□ -1.84
HOXD4P09016 MTATP6P15-201ENST00000527233 835 ntBASIC3.57□□□□□ -1.84
HOXD4P09016 UBTFL10-201ENST00000528532 562 ntBASIC3.57□□□□□ -1.84
HOXD4P09016 AP002001.2-201ENST00000529025 1469 ntBASIC3.57□□□□□ -1.84
HOXD4P09016 AC124293.1-201ENST00000530034 493 ntBASIC3.57□□□□□ -1.84
HOXD4P09016 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC3.57□□□□□ -1.84
HOXD4P09016 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC3.57□□□□□ -1.84
HOXD4P09016 NIFKP8-201ENST00000560500 874 ntBASIC3.57□□□□□ -1.84
HOXD4P09016 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC3.57□□□□□ -1.84
HOXD4P09016 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.57□□□□□ -1.84
HOXD4P09016 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC3.57□□□□□ -1.84
HOXD4P09016 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.57□□□□□ -1.84
HOXD4P09016 VN1R83P-201ENST00000595685 445 ntBASIC3.57□□□□□ -1.84
HOXD4P09016 AC008751.2-201ENST00000597885 980 ntBASIC3.57□□□□□ -1.84
HOXD4P09016 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.57□□□□□ -1.84
HOXD4P09016 NTAN1P1-201ENST00000603150 646 ntBASIC3.57□□□□□ -1.84
HOXD4P09016 AC104662.1-201ENST00000604448 511 ntBASIC3.57□□□□□ -1.84
HOXD4P09016 AC114878.2-201ENST00000604863 1251 ntBASIC3.57□□□□□ -1.84
HOXD4P09016 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.57□□□□□ -1.84
HOXD4P09016 AC104446.1-201ENST00000613728 1321 ntBASIC3.57□□□□□ -1.84
HOXD4P09016 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
HOXD4P09016 AL158163.2-201ENST00000619110 700 ntBASIC3.57□□□□□ -1.84
HOXD4P09016 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.57□□□□□ -1.84
HOXD4P09016 OR1S1-201ENST00000624470 978 ntBASIC3.57□□□□□ -1.84
HOXD4P09016 LINC02211-204ENST00000642024 1070 ntBASIC3.57□□□□□ -1.84
HOXD4P09016 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
HOXD4P09016 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.57□□□□□ -1.84
HOXD4P09016 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.57□□□□□ -1.84
HOXD4P09016 AL136964.1-201ENST00000622038 2990 ntBASIC3.57□□□□□ -1.84
HOXD4P09016 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.57□□□□□ -1.84
HOXD4P09016 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
HOXD4P09016 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
HOXD4P09016 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC3.57□□□□□ -1.84
HOXD4P09016 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC3.56□□□□□ -1.84
HOXD4P09016 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.56□□□□□ -1.84
HOXD4P09016 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
HOXD4P09016 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.56□□□□□ -1.84
HOXD4P09016 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
HOXD4P09016 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
HOXD4P09016 RNA5SP124-201ENST00000362739 110 ntBASIC3.56□□□□□ -1.84
HOXD4P09016 RNU4-92P-201ENST00000363783 136 ntBASIC3.56□□□□□ -1.84
HOXD4P09016 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC3.56□□□□□ -1.84
HOXD4P09016 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
HOXD4P09016 U1.1-201ENST00000384101 164 ntBASIC3.56□□□□□ -1.84
HOXD4P09016 SNORA11C-201ENST00000408532 129 ntBASIC3.56□□□□□ -1.84
HOXD4P09016 RNU6-77P-201ENST00000410554 91 ntBASIC3.56□□□□□ -1.84
HOXD4P09016 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC3.56□□□□□ -1.84
HOXD4P09016 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC3.56□□□□□ -1.84
HOXD4P09016 RPL7P34-201ENST00000433316 712 ntBASIC3.56□□□□□ -1.84
HOXD4P09016 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
HOXD4P09016 AC105402.2-201ENST00000438503 358 ntBASIC3.56□□□□□ -1.84
HOXD4P09016 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC3.56□□□□□ -1.84
HOXD4P09016 RPS7P5-201ENST00000441482 581 ntBASIC3.56□□□□□ -1.84
HOXD4P09016 PTENP1-201ENST00000447117 1215 ntBASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 109 ms