Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 TRBV26OR9-2-201ENST00000432077 293 ntBASIC3.63□□□□□ -1.83
SDC3O75056 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
SDC3O75056 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC3.63□□□□□ -1.83
SDC3O75056 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC3.63□□□□□ -1.83
SDC3O75056 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC3.63□□□□□ -1.83
SDC3O75056 AC073387.1-201ENST00000453261 709 ntBASIC3.63□□□□□ -1.83
SDC3O75056 RPS4XP10-201ENST00000465034 731 ntBASIC3.63□□□□□ -1.83
SDC3O75056 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC3.63□□□□□ -1.83
SDC3O75056 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
SDC3O75056 RAD51AP1P1-201ENST00000484195 1001 ntBASIC3.63□□□□□ -1.83
SDC3O75056 AC108941.1-201ENST00000502853 530 ntBASIC3.63□□□□□ -1.83
SDC3O75056 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC3.63□□□□□ -1.83
SDC3O75056 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.63□□□□□ -1.83
SDC3O75056 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC3.63□□□□□ -1.83
SDC3O75056 AC119751.1-201ENST00000513357 765 ntBASIC3.63□□□□□ -1.83
SDC3O75056 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC3.63□□□□□ -1.83
SDC3O75056 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC3.63□□□□□ -1.83
SDC3O75056 AP004242.1-201ENST00000533701 349 ntBASIC3.63□□□□□ -1.83
SDC3O75056 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC3.63□□□□□ -1.83
SDC3O75056 AC007458.1-201ENST00000542812 373 ntBASIC3.63□□□□□ -1.83
SDC3O75056 AC008011.1-201ENST00000545989 227 ntBASIC3.63□□□□□ -1.83
SDC3O75056 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC3.63□□□□□ -1.83
SDC3O75056 CYB5AP5-201ENST00000549779 389 ntBASIC3.63□□□□□ -1.83
SDC3O75056 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.63□□□□□ -1.83
SDC3O75056 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC3.63□□□□□ -1.83
SDC3O75056 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.63□□□□□ -1.83
SDC3O75056 AC022069.1-201ENST00000582910 658 ntBASIC3.63□□□□□ -1.83
SDC3O75056 AC010928.3-201ENST00000587712 541 ntBASIC3.63□□□□□ -1.83
SDC3O75056 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC3.63□□□□□ -1.83
SDC3O75056 VN1R87P-201ENST00000596706 487 ntBASIC3.63□□□□□ -1.83
SDC3O75056 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.63□□□□□ -1.83
SDC3O75056 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC3.63□□□□□ -1.83
SDC3O75056 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.63□□□□□ -1.83
SDC3O75056 AC018754.1-201ENST00000607486 925 ntBASIC3.63□□□□□ -1.83
SDC3O75056 AL442067.2-201ENST00000614033 363 ntBASIC3.63□□□□□ -1.83
SDC3O75056 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC3.63□□□□□ -1.83
SDC3O75056 PABPC1P7-201ENST00000413177 1513 ntBASIC3.63□□□□□ -1.83
SDC3O75056 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
SDC3O75056 SEPT7P7-201ENST00000420492 1301 ntBASIC3.63□□□□□ -1.83
SDC3O75056 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.62□□□□□ -1.83
SDC3O75056 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.62□□□□□ -1.83
SDC3O75056 SGO1P1-201ENST00000603525 1447 ntBASIC3.62□□□□□ -1.83
SDC3O75056 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
SDC3O75056 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
SDC3O75056 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
SDC3O75056 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
SDC3O75056 SNORD9-201ENST00000362566 104 ntBASIC3.62□□□□□ -1.83
SDC3O75056 RNU6-236P-201ENST00000363886 106 ntBASIC3.62□□□□□ -1.83
SDC3O75056 MIR16-1-201ENST00000385271 89 ntBASIC3.62□□□□□ -1.83
SDC3O75056 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
SDC3O75056 EIF5P1-201ENST00000400019 1231 ntBASIC3.62□□□□□ -1.83
SDC3O75056 SSXP10-201ENST00000402595 565 ntBASIC3.62□□□□□ -1.83
SDC3O75056 AC092638.1-201ENST00000411966 1275 ntBASIC3.62□□□□□ -1.83
SDC3O75056 MTND4P22-201ENST00000413116 1169 ntBASIC3.62□□□□□ -1.83
SDC3O75056 OR51A3P-201ENST00000413596 924 ntBASIC3.62□□□□□ -1.83
SDC3O75056 AC017083.1-201ENST00000428093 483 ntBASIC3.62□□□□□ -1.83
SDC3O75056 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC3.62□□□□□ -1.83
SDC3O75056 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC3.62□□□□□ -1.83
SDC3O75056 KCTD9P3-201ENST00000434597 1169 ntBASIC3.62□□□□□ -1.83
SDC3O75056 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.62□□□□□ -1.83
SDC3O75056 AL645931.1-201ENST00000439737 410 ntBASIC3.62□□□□□ -1.83
SDC3O75056 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC3.62□□□□□ -1.83
SDC3O75056 ZNF736P1Y-201ENST00000440402 1276 ntBASIC3.62□□□□□ -1.83
SDC3O75056 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC3.62□□□□□ -1.83
SDC3O75056 RPL9P32-201ENST00000464118 620 ntBASIC3.62□□□□□ -1.83
SDC3O75056 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC3.62□□□□□ -1.83
SDC3O75056 HMGB1P38-201ENST00000490557 577 ntBASIC3.62□□□□□ -1.83
SDC3O75056 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC3.62□□□□□ -1.83
SDC3O75056 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.62□□□□□ -1.83
SDC3O75056 RNF138P1-201ENST00000502765 546 ntBASIC3.62□□□□□ -1.83
SDC3O75056 SNORA70.18-201ENST00000516696 98 ntBASIC3.62□□□□□ -1.83
SDC3O75056 IGKV2-23-201ENST00000518729 323 ntBASIC3.62□□□□□ -1.83
SDC3O75056 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.62□□□□□ -1.83
SDC3O75056 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.62□□□□□ -1.83
SDC3O75056 OR7E13P-201ENST00000526052 910 ntBASIC3.62□□□□□ -1.83
SDC3O75056 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
SDC3O75056 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC3.62□□□□□ -1.83
SDC3O75056 CYP2C60P-201ENST00000566088 139 ntBASIC3.62□□□□□ -1.83
SDC3O75056 BPTFP1-201ENST00000579209 492 ntBASIC3.62□□□□□ -1.83
SDC3O75056 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC3.62□□□□□ -1.83
SDC3O75056 AC011492.1-201ENST00000600023 315 ntBASIC3.62□□□□□ -1.83
SDC3O75056 AL137849.1-201ENST00000604767 169 ntBASIC3.62□□□□□ -1.83
SDC3O75056 AL034351.1-201ENST00000605288 668 ntBASIC3.62□□□□□ -1.83
SDC3O75056 AC099785.1-201ENST00000605697 437 ntBASIC3.62□□□□□ -1.83
SDC3O75056 AL133445.2-201ENST00000611191 527 ntBASIC3.62□□□□□ -1.83
SDC3O75056 AC126544.2-201ENST00000625174 749 ntBASIC3.62□□□□□ -1.83
SDC3O75056 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
SDC3O75056 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.62□□□□□ -1.83
SDC3O75056 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
SDC3O75056 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
SDC3O75056 MAPK10-372ENST00000641954 3413 ntBASIC3.62□□□□□ -1.83
SDC3O75056 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC3.62□□□□□ -1.83
SDC3O75056 RPS4XP5-202ENST00000449995 1334 ntBASIC3.62□□□□□ -1.83
SDC3O75056 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC3.62□□□□□ -1.83
SDC3O75056 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
SDC3O75056 BDP1P-201ENST00000582658 1990 ntBASIC3.62□□□□□ -1.83
SDC3O75056 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.61□□□□□ -1.83
SDC3O75056 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
SDC3O75056 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC3.61□□□□□ -1.83
SDC3O75056 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms