Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RPL7P38-201ENST00000488396 739 ntBASIC3.58□□□□□ -1.84
NKX3-1Q99801 HMGB1P21-201ENST00000502313 581 ntBASIC3.58□□□□□ -1.84
NKX3-1Q99801 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC3.58□□□□□ -1.84
NKX3-1Q99801 AC010486.2-201ENST00000505572 483 ntBASIC3.58□□□□□ -1.84
NKX3-1Q99801 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC3.58□□□□□ -1.84
NKX3-1Q99801 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC3.58□□□□□ -1.84
NKX3-1Q99801 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC3.58□□□□□ -1.84
NKX3-1Q99801 RNU6-1129P-201ENST00000515964 104 ntBASIC3.58□□□□□ -1.84
NKX3-1Q99801 SNORA31.9-201ENST00000516429 84 ntBASIC3.58□□□□□ -1.84
NKX3-1Q99801 RN7SKP277-201ENST00000516895 283 ntBASIC3.58□□□□□ -1.84
NKX3-1Q99801 TRAPPC2P2-201ENST00000517589 409 ntBASIC3.58□□□□□ -1.84
NKX3-1Q99801 AP000926.4-201ENST00000527351 454 ntBASIC3.58□□□□□ -1.84
NKX3-1Q99801 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC3.58□□□□□ -1.84
NKX3-1Q99801 REXO2-218ENST00000544827 880 ntTSL 3 BASIC3.58□□□□□ -1.84
NKX3-1Q99801 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC3.58□□□□□ -1.84
NKX3-1Q99801 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC3.58□□□□□ -1.84
NKX3-1Q99801 AC074029.1-201ENST00000552531 1044 ntBASIC3.58□□□□□ -1.84
NKX3-1Q99801 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC3.58□□□□□ -1.84
NKX3-1Q99801 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC3.58□□□□□ -1.84
NKX3-1Q99801 AC068831.4-201ENST00000556118 109 ntBASIC3.58□□□□□ -1.84
NKX3-1Q99801 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC3.58□□□□□ -1.84
NKX3-1Q99801 AC022655.2-201ENST00000577280 318 ntBASIC3.58□□□□□ -1.84
NKX3-1Q99801 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC3.58□□□□□ -1.84
NKX3-1Q99801 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC3.58□□□□□ -1.84
NKX3-1Q99801 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC3.58□□□□□ -1.84
NKX3-1Q99801 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC3.58□□□□□ -1.84
NKX3-1Q99801 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC3.58□□□□□ -1.84
NKX3-1Q99801 AC068313.1-201ENST00000604028 1008 ntBASIC3.58□□□□□ -1.84
NKX3-1Q99801 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC3.58□□□□□ -1.84
NKX3-1Q99801 AC090246.1-201ENST00000616499 426 ntBASIC3.58□□□□□ -1.84
NKX3-1Q99801 uc_338.13-201ENST00000618243 179 ntBASIC3.58□□□□□ -1.84
NKX3-1Q99801 AC131159.1-201ENST00000621854 213 ntBASIC3.58□□□□□ -1.84
NKX3-1Q99801 MIR4727-201ENST00000622232 55 ntBASIC3.58□□□□□ -1.84
NKX3-1Q99801 AC079416.3-201ENST00000624479 549 ntBASIC3.58□□□□□ -1.84
NKX3-1Q99801 AC140479.6-201ENST00000633535 357 ntBASIC3.58□□□□□ -1.84
NKX3-1Q99801 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
NKX3-1Q99801 ELL2P4-201ENST00000446870 1376 ntBASIC3.58□□□□□ -1.84
NKX3-1Q99801 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
NKX3-1Q99801 AC027287.1-201ENST00000553115 1453 ntBASIC3.58□□□□□ -1.84
NKX3-1Q99801 CDR1-202ENST00000625883 1485 ntBASIC3.58□□□□□ -1.84
NKX3-1Q99801 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC3.58□□□□□ -1.84
NKX3-1Q99801 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.58□□□□□ -1.84
NKX3-1Q99801 AC018555.1-201ENST00000567548 1980 ntBASIC3.58□□□□□ -1.84
NKX3-1Q99801 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
NKX3-1Q99801 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC3.58□□□□□ -1.84
NKX3-1Q99801 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
NKX3-1Q99801 OFD1P5Y-201ENST00000447585 2590 ntBASIC3.57□□□□□ -1.84
NKX3-1Q99801 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.57□□□□□ -1.84
NKX3-1Q99801 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
NKX3-1Q99801 SNRPEP3-201ENST00000338402 276 ntBASIC3.57□□□□□ -1.84
NKX3-1Q99801 SYF2-202ENST00000354361 926 ntTSL 2 BASIC3.57□□□□□ -1.84
NKX3-1Q99801 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.57□□□□□ -1.84
NKX3-1Q99801 TAF9BP1-201ENST00000396646 746 ntBASIC3.57□□□□□ -1.84
NKX3-1Q99801 PGBD4P8-201ENST00000412993 562 ntBASIC3.57□□□□□ -1.84
NKX3-1Q99801 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC3.57□□□□□ -1.84
NKX3-1Q99801 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC3.57□□□□□ -1.84
NKX3-1Q99801 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC3.57□□□□□ -1.84
NKX3-1Q99801 CYP4F29P-201ENST00000420685 446 ntBASIC3.57□□□□□ -1.84
NKX3-1Q99801 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC3.57□□□□□ -1.84
NKX3-1Q99801 MTND5P25-201ENST00000430499 799 ntBASIC3.57□□□□□ -1.84
NKX3-1Q99801 RPS6P12-201ENST00000432491 726 ntBASIC3.57□□□□□ -1.84
NKX3-1Q99801 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC3.57□□□□□ -1.84
NKX3-1Q99801 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
NKX3-1Q99801 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC3.57□□□□□ -1.84
NKX3-1Q99801 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.57□□□□□ -1.84
NKX3-1Q99801 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC3.57□□□□□ -1.84
NKX3-1Q99801 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC3.57□□□□□ -1.84
NKX3-1Q99801 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC3.57□□□□□ -1.84
NKX3-1Q99801 SLC31A1P1-201ENST00000451221 567 ntBASIC3.57□□□□□ -1.84
NKX3-1Q99801 ART2BP-201ENST00000453501 499 ntBASIC3.57□□□□□ -1.84
NKX3-1Q99801 AC010301.1-201ENST00000473936 355 ntBASIC3.57□□□□□ -1.84
NKX3-1Q99801 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC3.57□□□□□ -1.84
NKX3-1Q99801 RPL31P61-201ENST00000496160 376 ntBASIC3.57□□□□□ -1.84
NKX3-1Q99801 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
NKX3-1Q99801 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
NKX3-1Q99801 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC3.57□□□□□ -1.84
NKX3-1Q99801 RNA5SP49-201ENST00000516450 115 ntBASIC3.57□□□□□ -1.84
NKX3-1Q99801 IGKV2-38-201ENST00000517443 247 ntBASIC3.57□□□□□ -1.84
NKX3-1Q99801 PTK2-220ENST00000520151 573 ntTSL 4 BASIC3.57□□□□□ -1.84
NKX3-1Q99801 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC3.57□□□□□ -1.84
NKX3-1Q99801 AP001636.2-201ENST00000525517 696 ntBASIC3.57□□□□□ -1.84
NKX3-1Q99801 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
NKX3-1Q99801 PTP4A1P6-201ENST00000531034 478 ntBASIC3.57□□□□□ -1.84
NKX3-1Q99801 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC3.57□□□□□ -1.84
NKX3-1Q99801 MRPS36P5-201ENST00000551909 298 ntBASIC3.57□□□□□ -1.84
NKX3-1Q99801 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC3.57□□□□□ -1.84
NKX3-1Q99801 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC3.57□□□□□ -1.84
NKX3-1Q99801 SULT1C2P1-202ENST00000562418 459 ntBASIC3.57□□□□□ -1.84
NKX3-1Q99801 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC3.57□□□□□ -1.84
NKX3-1Q99801 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
NKX3-1Q99801 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC3.57□□□□□ -1.84
NKX3-1Q99801 AC020914.4-201ENST00000597690 277 ntBASIC3.57□□□□□ -1.84
NKX3-1Q99801 AL139286.1-201ENST00000604465 483 ntBASIC3.57□□□□□ -1.84
NKX3-1Q99801 AC069304.2-201ENST00000605154 435 ntBASIC3.57□□□□□ -1.84
NKX3-1Q99801 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC3.57□□□□□ -1.84
NKX3-1Q99801 AC092650.2-201ENST00000619984 902 ntBASIC3.57□□□□□ -1.84
NKX3-1Q99801 FAM157B-203ENST00000639350 358 ntBASIC3.57□□□□□ -1.84
NKX3-1Q99801 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC3.57□□□□□ -1.84
NKX3-1Q99801 MAPK10-373ENST00000641983 6772 ntBASIC3.57□□□□□ -1.84
NKX3-1Q99801 AC106871.1-201ENST00000568324 3102 ntBASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 162.3 ms