Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 SNORA64-201ENST00000384674 134 ntBASIC2.63□□□□□ -1.99
VPS13AQ96RL7 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC2.63□□□□□ -1.99
VPS13AQ96RL7 AC092013.1-201ENST00000438795 332 ntBASIC2.63□□□□□ -1.99
VPS13AQ96RL7 Z99127.2-201ENST00000441426 334 ntBASIC2.63□□□□□ -1.99
VPS13AQ96RL7 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC2.63□□□□□ -1.99
VPS13AQ96RL7 AC091179.1-201ENST00000461606 579 ntBASIC2.63□□□□□ -1.99
VPS13AQ96RL7 SRIP1-201ENST00000489235 288 ntBASIC2.63□□□□□ -1.99
VPS13AQ96RL7 AC116337.1-201ENST00000509680 687 ntBASIC2.63□□□□□ -1.99
VPS13AQ96RL7 RNA5SP320-201ENST00000516263 124 ntBASIC2.63□□□□□ -1.99
VPS13AQ96RL7 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC2.63□□□□□ -1.99
VPS13AQ96RL7 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC2.63□□□□□ -1.99
VPS13AQ96RL7 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC2.63□□□□□ -1.99
VPS13AQ96RL7 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC2.63□□□□□ -1.99
VPS13AQ96RL7 RPL23AP36-201ENST00000413895 458 ntBASIC2.63□□□□□ -1.99
VPS13AQ96RL7 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.63□□□□□ -1.99
VPS13AQ96RL7 HMGB3P6-201ENST00000444896 598 ntBASIC2.63□□□□□ -1.99
VPS13AQ96RL7 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC2.63□□□□□ -1.99
VPS13AQ96RL7 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
VPS13AQ96RL7 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC2.63□□□□□ -1.99
VPS13AQ96RL7 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC2.63□□□□□ -1.99
VPS13AQ96RL7 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
VPS13AQ96RL7 AC004696.1-201ENST00000614345 607 ntBASIC2.63□□□□□ -1.99
VPS13AQ96RL7 AC019080.5-201ENST00000624891 757 ntBASIC2.63□□□□□ -1.99
VPS13AQ96RL7 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
VPS13AQ96RL7 MUC2-202ENST00000613187 4845 ntBASIC2.63□□□□□ -1.99
VPS13AQ96RL7 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.63□□□□□ -1.99
VPS13AQ96RL7 Y_RNA.338-201ENST00000365320 114 ntBASIC2.63□□□□□ -1.99
VPS13AQ96RL7 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC2.63□□□□□ -1.99
VPS13AQ96RL7 SEC11B-201ENST00000518383 499 ntBASIC2.63□□□□□ -1.99
VPS13AQ96RL7 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
VPS13AQ96RL7 AL391156.1-201ENST00000554965 554 ntBASIC2.63□□□□□ -1.99
VPS13AQ96RL7 MIR4738-201ENST00000579134 87 ntBASIC2.63□□□□□ -1.99
VPS13AQ96RL7 AL356490.1-201ENST00000623079 479 ntBASIC2.63□□□□□ -1.99
VPS13AQ96RL7 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC2.62□□□□□ -1.99
VPS13AQ96RL7 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC2.62□□□□□ -1.99
VPS13AQ96RL7 RPL23AP11-201ENST00000475260 469 ntBASIC2.62□□□□□ -1.99
VPS13AQ96RL7 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC2.62□□□□□ -1.99
VPS13AQ96RL7 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC2.62□□□□□ -1.99
VPS13AQ96RL7 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.62□□□□□ -1.99
VPS13AQ96RL7 AC010620.2-201ENST00000600135 313 ntBASIC2.62□□□□□ -1.99
VPS13AQ96RL7 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
VPS13AQ96RL7 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
VPS13AQ96RL7 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC2.62□□□□□ -1.99
VPS13AQ96RL7 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
VPS13AQ96RL7 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC2.62□□□□□ -1.99
VPS13AQ96RL7 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC2.62□□□□□ -1.99
VPS13AQ96RL7 Z82209.1-201ENST00000422141 2135 ntBASIC2.62□□□□□ -1.99
VPS13AQ96RL7 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC2.62□□□□□ -1.99
VPS13AQ96RL7 BTF3P7-201ENST00000407097 488 ntBASIC2.62□□□□□ -1.99
VPS13AQ96RL7 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC2.62□□□□□ -1.99
VPS13AQ96RL7 RPL29P29-201ENST00000448725 423 ntBASIC2.62□□□□□ -1.99
VPS13AQ96RL7 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.62□□□□□ -1.99
VPS13AQ96RL7 AC113430.1-201ENST00000506872 718 ntBASIC2.62□□□□□ -1.99
VPS13AQ96RL7 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
VPS13AQ96RL7 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC2.62□□□□□ -1.99
VPS13AQ96RL7 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC2.62□□□□□ -1.99
VPS13AQ96RL7 AC009414.1-201ENST00000427200 443 ntBASIC2.61□□□□□ -1.99
VPS13AQ96RL7 AL662791.1-201ENST00000441992 928 ntBASIC2.61□□□□□ -1.99
VPS13AQ96RL7 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC2.61□□□□□ -1.99
VPS13AQ96RL7 TRBV1-201ENST00000476502 284 ntBASIC2.61□□□□□ -1.99
VPS13AQ96RL7 MIR4781-201ENST00000585250 76 ntBASIC2.61□□□□□ -1.99
VPS13AQ96RL7 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC2.61□□□□□ -1.99
VPS13AQ96RL7 AC005539.1-201ENST00000443768 1479 ntBASIC2.61□□□□□ -1.99
VPS13AQ96RL7 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
VPS13AQ96RL7 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
VPS13AQ96RL7 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC2.61□□□□□ -1.99
VPS13AQ96RL7 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
VPS13AQ96RL7 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
VPS13AQ96RL7 RNU6-1159P-201ENST00000362933 107 ntBASIC2.61□□□□□ -1.99
VPS13AQ96RL7 YPEL5P1-201ENST00000419731 367 ntBASIC2.61□□□□□ -1.99
VPS13AQ96RL7 RPL23AP31-201ENST00000456160 467 ntBASIC2.61□□□□□ -1.99
VPS13AQ96RL7 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC2.61□□□□□ -1.99
VPS13AQ96RL7 MAL2-203ENST00000534619 578 ntTSL 4 BASIC2.61□□□□□ -1.99
VPS13AQ96RL7 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC2.61□□□□□ -1.99
VPS13AQ96RL7 AC091903.1-201ENST00000624322 454 ntBASIC2.61□□□□□ -1.99
VPS13AQ96RL7 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC2.61□□□□□ -1.99
VPS13AQ96RL7 ZNF72P-201ENST00000425869 1908 ntBASIC2.61□□□□□ -1.99
VPS13AQ96RL7 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC2.61□□□□□ -1.99
VPS13AQ96RL7 AC018634.1-201ENST00000437554 401 ntBASIC2.61□□□□□ -1.99
VPS13AQ96RL7 AC096638.1-201ENST00000444678 216 ntBASIC2.61□□□□□ -1.99
VPS13AQ96RL7 AC126121.1-201ENST00000482313 553 ntBASIC2.61□□□□□ -1.99
VPS13AQ96RL7 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC2.61□□□□□ -1.99
VPS13AQ96RL7 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC2.61□□□□□ -1.99
VPS13AQ96RL7 RMST_8.1-201ENST00000610287 165 ntBASIC2.61□□□□□ -1.99
VPS13AQ96RL7 AC080128.1-201ENST00000474389 1917 ntBASIC2.6□□□□□ -1.99
VPS13AQ96RL7 AC019072.1-201ENST00000604535 1551 ntBASIC2.6□□□□□ -1.99
VPS13AQ96RL7 GABRG2-229ENST00000641017 3628 ntBASIC2.6□□□□□ -1.99
VPS13AQ96RL7 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC2.6□□□□□ -1.99
VPS13AQ96RL7 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
VPS13AQ96RL7 RPLP0P7-201ENST00000416050 667 ntBASIC2.6□□□□□ -1.99
VPS13AQ96RL7 CYCSP49-201ENST00000420810 319 ntBASIC2.6□□□□□ -1.99
VPS13AQ96RL7 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.6□□□□□ -1.99
VPS13AQ96RL7 HMGN1P5-201ENST00000448591 263 ntBASIC2.6□□□□□ -1.99
VPS13AQ96RL7 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.6□□□□□ -1.99
VPS13AQ96RL7 snoU13.18-201ENST00000459483 104 ntBASIC2.6□□□□□ -1.99
VPS13AQ96RL7 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC2.6□□□□□ -1.99
VPS13AQ96RL7 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC2.6□□□□□ -1.99
VPS13AQ96RL7 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC2.6□□□□□ -1.99
VPS13AQ96RL7 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC2.6□□□□□ -1.99
VPS13AQ96RL7 SETP1-201ENST00000556014 845 ntBASIC2.6□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 94.9 ms