Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
CCDC42Q96M95 PANCR-201ENST00000503456 493 ntTSL 5 BASIC3.24□□□□□ -1.89
CCDC42Q96M95 CCNHP1-201ENST00000513311 678 ntBASIC3.24□□□□□ -1.89
CCDC42Q96M95 RNU6-1308P-201ENST00000516817 103 ntBASIC3.24□□□□□ -1.89
CCDC42Q96M95 SNORA31.26-201ENST00000517250 137 ntBASIC3.24□□□□□ -1.89
CCDC42Q96M95 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.24□□□□□ -1.89
CCDC42Q96M95 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC3.24□□□□□ -1.89
CCDC42Q96M95 AC007536.1-201ENST00000533382 349 ntBASIC3.24□□□□□ -1.89
CCDC42Q96M95 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC3.24□□□□□ -1.89
CCDC42Q96M95 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.24□□□□□ -1.89
CCDC42Q96M95 CENPUP2-201ENST00000555897 1186 ntBASIC3.24□□□□□ -1.89
CCDC42Q96M95 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC3.24□□□□□ -1.89
CCDC42Q96M95 UBL5P2-201ENST00000583788 219 ntBASIC3.24□□□□□ -1.89
CCDC42Q96M95 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.24□□□□□ -1.89
CCDC42Q96M95 AC245389.2-201ENST00000616023 576 ntBASIC3.24□□□□□ -1.89
CCDC42Q96M95 AC243756.2-201ENST00000618406 463 ntBASIC3.24□□□□□ -1.89
CCDC42Q96M95 AC242843.1-201ENST00000618702 573 ntBASIC3.24□□□□□ -1.89
CCDC42Q96M95 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.24□□□□□ -1.89
CCDC42Q96M95 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
CCDC42Q96M95 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
CCDC42Q96M95 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC42Q96M95 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC42Q96M95 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC42Q96M95 AC073325.2-201ENST00000339545 159 ntBASIC3.23□□□□□ -1.89
CCDC42Q96M95 U8.9-201ENST00000365667 134 ntBASIC3.23□□□□□ -1.89
CCDC42Q96M95 SAR1AP2-201ENST00000392696 594 ntBASIC3.23□□□□□ -1.89
CCDC42Q96M95 RNU4-47P-201ENST00000410876 114 ntBASIC3.23□□□□□ -1.89
CCDC42Q96M95 AL592437.1-201ENST00000443781 492 ntBASIC3.23□□□□□ -1.89
CCDC42Q96M95 Z75741.1-201ENST00000446793 314 ntBASIC3.23□□□□□ -1.89
CCDC42Q96M95 AL157827.1-201ENST00000447622 132 ntBASIC3.23□□□□□ -1.89
CCDC42Q96M95 AC012181.1-201ENST00000479895 423 ntBASIC3.23□□□□□ -1.89
CCDC42Q96M95 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC3.23□□□□□ -1.89
CCDC42Q96M95 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.23□□□□□ -1.89
CCDC42Q96M95 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC42Q96M95 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC3.23□□□□□ -1.89
CCDC42Q96M95 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.23□□□□□ -1.89
CCDC42Q96M95 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC42Q96M95 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC3.23□□□□□ -1.89
CCDC42Q96M95 AC078899.3-201ENST00000599065 212 ntBASIC3.23□□□□□ -1.89
CCDC42Q96M95 AC012119.1-201ENST00000603184 222 ntBASIC3.23□□□□□ -1.89
CCDC42Q96M95 AL133393.1-201ENST00000603277 287 ntBASIC3.23□□□□□ -1.89
CCDC42Q96M95 AC105227.2-201ENST00000615075 605 ntBASIC3.23□□□□□ -1.89
CCDC42Q96M95 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.23□□□□□ -1.89
CCDC42Q96M95 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.23□□□□□ -1.89
CCDC42Q96M95 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.22□□□□□ -1.89
CCDC42Q96M95 AC087565.3-202ENST00000642085 1603 ntBASIC3.22□□□□□ -1.89
CCDC42Q96M95 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC3.22□□□□□ -1.89
CCDC42Q96M95 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.22□□□□□ -1.89
CCDC42Q96M95 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC42Q96M95 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC42Q96M95 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC42Q96M95 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
CCDC42Q96M95 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.22□□□□□ -1.89
CCDC42Q96M95 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC42Q96M95 MIR607-201ENST00000385241 96 ntBASIC3.22□□□□□ -1.89
CCDC42Q96M95 PTMAP2-201ENST00000397627 327 ntBASIC3.22□□□□□ -1.89
CCDC42Q96M95 MIR887-201ENST00000401258 79 ntBASIC3.22□□□□□ -1.89
CCDC42Q96M95 RNA5SP344-201ENST00000411081 104 ntBASIC3.22□□□□□ -1.89
CCDC42Q96M95 RPL31P2-201ENST00000413849 377 ntBASIC3.22□□□□□ -1.89
CCDC42Q96M95 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC3.22□□□□□ -1.89
CCDC42Q96M95 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC42Q96M95 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.22□□□□□ -1.89
CCDC42Q96M95 AC097713.2-201ENST00000430199 356 ntBASIC3.22□□□□□ -1.89
CCDC42Q96M95 AL392003.1-201ENST00000434394 243 ntBASIC3.22□□□□□ -1.89
CCDC42Q96M95 YWHAZP7-201ENST00000436906 631 ntBASIC3.22□□□□□ -1.89
CCDC42Q96M95 MTCYBP12-201ENST00000440559 1134 ntBASIC3.22□□□□□ -1.89
CCDC42Q96M95 Z95327.1-201ENST00000446082 482 ntBASIC3.22□□□□□ -1.89
CCDC42Q96M95 RPL29P29-201ENST00000448725 423 ntBASIC3.22□□□□□ -1.89
CCDC42Q96M95 AC104308.1-201ENST00000454621 333 ntBASIC3.22□□□□□ -1.89
CCDC42Q96M95 RPS26P21-201ENST00000475397 348 ntBASIC3.22□□□□□ -1.89
CCDC42Q96M95 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC3.22□□□□□ -1.89
CCDC42Q96M95 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC3.22□□□□□ -1.89
CCDC42Q96M95 RNU6-1004P-201ENST00000516584 111 ntBASIC3.22□□□□□ -1.89
CCDC42Q96M95 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.22□□□□□ -1.89
CCDC42Q96M95 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC3.22□□□□□ -1.89
CCDC42Q96M95 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC3.22□□□□□ -1.89
CCDC42Q96M95 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC3.22□□□□□ -1.89
CCDC42Q96M95 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC3.22□□□□□ -1.89
CCDC42Q96M95 BNIP3P5-201ENST00000562290 498 ntBASIC3.22□□□□□ -1.89
CCDC42Q96M95 CSNK1A1P1-202ENST00000563423 981 ntBASIC3.22□□□□□ -1.89
CCDC42Q96M95 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.22□□□□□ -1.89
CCDC42Q96M95 AC005242.1-201ENST00000585658 438 ntBASIC3.22□□□□□ -1.89
CCDC42Q96M95 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC3.22□□□□□ -1.89
CCDC42Q96M95 AC090525.3-201ENST00000605601 189 ntBASIC3.22□□□□□ -1.89
CCDC42Q96M95 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.22□□□□□ -1.89
CCDC42Q96M95 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
CCDC42Q96M95 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC42Q96M95 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC42Q96M95 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.21□□□□□ -1.89
CCDC42Q96M95 AC093010.3-201ENST00000570269 15214 ntBASIC3.21□□□□□ -1.9
CCDC42Q96M95 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
CCDC42Q96M95 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
CCDC42Q96M95 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
CCDC42Q96M95 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC42Q96M95 MIR200C-201ENST00000384980 68 ntBASIC3.21□□□□□ -1.9
CCDC42Q96M95 AC025750.1-201ENST00000399891 379 ntBASIC3.21□□□□□ -1.9
CCDC42Q96M95 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.21□□□□□ -1.9
CCDC42Q96M95 AL451074.5-201ENST00000415894 435 ntBASIC3.21□□□□□ -1.9
CCDC42Q96M95 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
CCDC42Q96M95 MTCO1P45-201ENST00000431457 267 ntBASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms