Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC0.93□□□□□ -2.26
SYNE1Q8NF91 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC0.93□□□□□ -2.26
SYNE1Q8NF91 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC0.93□□□□□ -2.26
SYNE1Q8NF91 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC0.93□□□□□ -2.26
SYNE1Q8NF91 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
SYNE1Q8NF91 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC0.93□□□□□ -2.26
SYNE1Q8NF91 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
SYNE1Q8NF91 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC0.93□□□□□ -2.26
SYNE1Q8NF91 MIR30E-201ENST00000362104 92 ntBASIC0.93□□□□□ -2.26
SYNE1Q8NF91 AC127526.1-201ENST00000417526 366 ntBASIC0.93□□□□□ -2.26
SYNE1Q8NF91 AC233981.1-201ENST00000423224 461 ntBASIC0.93□□□□□ -2.26
SYNE1Q8NF91 MTCO1P39-201ENST00000426148 480 ntBASIC0.93□□□□□ -2.26
SYNE1Q8NF91 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC0.93□□□□□ -2.26
SYNE1Q8NF91 RN7SKP31-201ENST00000516354 278 ntBASIC0.93□□□□□ -2.26
SYNE1Q8NF91 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC0.93□□□□□ -2.26
SYNE1Q8NF91 AL162574.2-201ENST00000614618 657 ntBASIC0.93□□□□□ -2.26
SYNE1Q8NF91 AC099506.2-201ENST00000623074 221 ntBASIC0.93□□□□□ -2.26
SYNE1Q8NF91 AP002967.1-201ENST00000624203 539 ntBASIC0.93□□□□□ -2.26
SYNE1Q8NF91 AC019080.5-201ENST00000624891 757 ntBASIC0.93□□□□□ -2.26
SYNE1Q8NF91 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC0.93□□□□□ -2.26
SYNE1Q8NF91 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 CST9LP2-201ENST00000437612 320 ntBASIC0.92□□□□□ -2.26
SYNE1Q8NF91 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 RPS27P29-201ENST00000463110 252 ntBASIC0.92□□□□□ -2.26
SYNE1Q8NF91 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 RPS4XP6-201ENST00000477670 797 ntBASIC0.92□□□□□ -2.26
SYNE1Q8NF91 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 IGKV1OR2-6-201ENST00000603485 277 ntBASIC0.92□□□□□ -2.26
SYNE1Q8NF91 AC015871.2-201ENST00000603605 948 ntBASIC0.92□□□□□ -2.26
SYNE1Q8NF91 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 AC000403.1-201ENST00000613696 3585 ntBASIC0.92□□□□□ -2.26
SYNE1Q8NF91 AC021205.2-201ENST00000480069 347 ntBASIC0.92□□□□□ -2.26
SYNE1Q8NF91 AC098583.1-201ENST00000480875 255 ntBASIC0.92□□□□□ -2.26
SYNE1Q8NF91 RPL23AP70-201ENST00000483361 460 ntBASIC0.92□□□□□ -2.26
SYNE1Q8NF91 HMGB3P14-201ENST00000494195 599 ntBASIC0.92□□□□□ -2.26
SYNE1Q8NF91 SNORA70.14-201ENST00000516205 110 ntBASIC0.92□□□□□ -2.26
SYNE1Q8NF91 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 AC006254.3-201ENST00000603353 884 ntBASIC0.92□□□□□ -2.26
SYNE1Q8NF91 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 STK31-205ENST00000433467 3085 ntTSL 2 BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 AL645568.2-201ENST00000432815 1337 ntBASIC0.92□□□□□ -2.26
SYNE1Q8NF91 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 RNU1-140P-201ENST00000365040 165 ntBASIC0.92□□□□□ -2.26
SYNE1Q8NF91 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 AL353678.1-201ENST00000422735 741 ntBASIC0.92□□□□□ -2.26
SYNE1Q8NF91 ANKRD30BP3-201ENST00000444850 1070 ntBASIC0.92□□□□□ -2.26
SYNE1Q8NF91 TRBV12-1-201ENST00000479785 344 ntBASIC0.92□□□□□ -2.26
SYNE1Q8NF91 KLHL2P1-201ENST00000508691 521 ntBASIC0.92□□□□□ -2.26
SYNE1Q8NF91 AC245100.7-201ENST00000609678 442 ntBASIC0.92□□□□□ -2.26
SYNE1Q8NF91 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 OR1S2-201ENST00000302592 978 ntBASIC0.92□□□□□ -2.26
SYNE1Q8NF91 CD2-201ENST00000369477 478 ntTSL 2 BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 AL136116.1-201ENST00000403591 381 ntBASIC0.92□□□□□ -2.26
SYNE1Q8NF91 RNU2-52P-201ENST00000410680 190 ntBASIC0.92□□□□□ -2.26
SYNE1Q8NF91 AMD1P2-201ENST00000412936 992 ntBASIC0.92□□□□□ -2.26
SYNE1Q8NF91 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 EMP1-206ENST00000537612 505 ntTSL 3 BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 AC006518.1-201ENST00000541449 943 ntBASIC0.92□□□□□ -2.26
SYNE1Q8NF91 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 VN1R90P-201ENST00000595717 726 ntBASIC0.92□□□□□ -2.26
SYNE1Q8NF91 AC007566.2-201ENST00000603642 413 ntBASIC0.92□□□□□ -2.26
SYNE1Q8NF91 HOTTIP_4.1-201ENST00000618195 165 ntBASIC0.92□□□□□ -2.26
SYNE1Q8NF91 AC099063.3-201ENST00000642066 185 ntBASIC0.92□□□□□ -2.26
SYNE1Q8NF91 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 RNU6-7-201ENST00000364784 107 ntBASIC0.92□□□□□ -2.26
SYNE1Q8NF91 RNU6-8-201ENST00000365467 107 ntBASIC0.92□□□□□ -2.26
SYNE1Q8NF91 RFX3-203ENST00000381984 364 ntTSL 3 BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 LSM5-206ENST00000409987 504 ntTSL 5 BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 RPL23AP22-201ENST00000437556 453 ntBASIC0.92□□□□□ -2.26
SYNE1Q8NF91 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 AC010306.1-201ENST00000523223 1117 ntBASIC0.92□□□□□ -2.26
SYNE1Q8NF91 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 uc_338.25-201ENST00000613756 156 ntBASIC0.92□□□□□ -2.26
SYNE1Q8NF91 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 AL359693.1-201ENST00000614959 2407 ntBASIC0.92□□□□□ -2.26
SYNE1Q8NF91 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 RLIMP2-201ENST00000427891 1563 ntBASIC0.92□□□□□ -2.26
SYNE1Q8NF91 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC0.92□□□□□ -2.26
SYNE1Q8NF91 RWDD4P2-201ENST00000426392 563 ntBASIC0.92□□□□□ -2.26
SYNE1Q8NF91 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC0.92□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 182.2 ms