Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC3.72□□□□□ -1.81
HOXA1P49639 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
HOXA1P49639 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.72□□□□□ -1.81
HOXA1P49639 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
HOXA1P49639 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.71□□□□□ -1.81
HOXA1P49639 Z82217.1-201ENST00000625157 8149 ntBASIC3.71□□□□□ -1.81
HOXA1P49639 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.71□□□□□ -1.81
HOXA1P49639 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.71□□□□□ -1.81
HOXA1P49639 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
HOXA1P49639 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
HOXA1P49639 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
HOXA1P49639 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
HOXA1P49639 Y_RNA.553-201ENST00000384670 102 ntBASIC3.71□□□□□ -1.82
HOXA1P49639 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
HOXA1P49639 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
HOXA1P49639 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
HOXA1P49639 AL138880.1-201ENST00000405824 642 ntBASIC3.71□□□□□ -1.82
HOXA1P49639 RN7SKP213-201ENST00000410746 298 ntBASIC3.71□□□□□ -1.82
HOXA1P49639 AC004022.2-201ENST00000413824 193 ntBASIC3.71□□□□□ -1.82
HOXA1P49639 CHEK2P3-201ENST00000416118 248 ntBASIC3.71□□□□□ -1.82
HOXA1P49639 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC3.71□□□□□ -1.82
HOXA1P49639 AC093162.1-201ENST00000419682 124 ntBASIC3.71□□□□□ -1.82
HOXA1P49639 AC006366.1-201ENST00000422002 759 ntBASIC3.71□□□□□ -1.82
HOXA1P49639 CENPIP1-201ENST00000425713 902 ntBASIC3.71□□□□□ -1.82
HOXA1P49639 NIPA2P1-201ENST00000426223 976 ntBASIC3.71□□□□□ -1.82
HOXA1P49639 RPL21P91-201ENST00000429231 479 ntBASIC3.71□□□□□ -1.82
HOXA1P49639 CCNB1IP1P2-201ENST00000432876 818 ntBASIC3.71□□□□□ -1.82
HOXA1P49639 UBE2V1P3-201ENST00000439651 417 ntBASIC3.71□□□□□ -1.82
HOXA1P49639 RPL39P6-201ENST00000448289 150 ntBASIC3.71□□□□□ -1.82
HOXA1P49639 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC3.71□□□□□ -1.82
HOXA1P49639 AC108463.1-201ENST00000450258 347 ntBASIC3.71□□□□□ -1.82
HOXA1P49639 HMGN3P1-201ENST00000453847 193 ntBASIC3.71□□□□□ -1.82
HOXA1P49639 RPS5P7-201ENST00000456664 608 ntBASIC3.71□□□□□ -1.82
HOXA1P49639 AL136126.1-201ENST00000473603 402 ntBASIC3.71□□□□□ -1.82
HOXA1P49639 AC010301.1-201ENST00000473936 355 ntBASIC3.71□□□□□ -1.82
HOXA1P49639 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXA1P49639 RN7SL481P-201ENST00000477764 299 ntBASIC3.71□□□□□ -1.82
HOXA1P49639 RN7SL629P-201ENST00000489622 285 ntBASIC3.71□□□□□ -1.82
HOXA1P49639 AC090071.1-201ENST00000507713 644 ntBASIC3.71□□□□□ -1.82
HOXA1P49639 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXA1P49639 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXA1P49639 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXA1P49639 SCARNA21.2-201ENST00000516600 166 ntBASIC3.71□□□□□ -1.82
HOXA1P49639 ARL2BPP5-201ENST00000523141 481 ntBASIC3.71□□□□□ -1.82
HOXA1P49639 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC3.71□□□□□ -1.82
HOXA1P49639 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC3.71□□□□□ -1.82
HOXA1P49639 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC3.71□□□□□ -1.82
HOXA1P49639 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC3.71□□□□□ -1.82
HOXA1P49639 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC3.71□□□□□ -1.82
HOXA1P49639 SULT1C2P1-202ENST00000562418 459 ntBASIC3.71□□□□□ -1.82
HOXA1P49639 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXA1P49639 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC3.71□□□□□ -1.82
HOXA1P49639 MIR4716-201ENST00000579628 84 ntBASIC3.71□□□□□ -1.82
HOXA1P49639 MIR548AB-201ENST00000584917 84 ntBASIC3.71□□□□□ -1.82
HOXA1P49639 VN1R92P-201ENST00000598511 928 ntBASIC3.71□□□□□ -1.82
HOXA1P49639 AL596327.1-201ENST00000603629 213 ntBASIC3.71□□□□□ -1.82
HOXA1P49639 AC012603.1-201ENST00000606424 528 ntBASIC3.71□□□□□ -1.82
HOXA1P49639 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC3.71□□□□□ -1.82
HOXA1P49639 HULC.1-201ENST00000612720 240 ntBASIC3.71□□□□□ -1.82
HOXA1P49639 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC3.71□□□□□ -1.82
HOXA1P49639 AP002799.1-201ENST00000623552 423 ntBASIC3.71□□□□□ -1.82
HOXA1P49639 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.82
HOXA1P49639 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
HOXA1P49639 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
HOXA1P49639 DDX43P2-201ENST00000604753 1354 ntBASIC3.71□□□□□ -1.82
HOXA1P49639 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
HOXA1P49639 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC3.71□□□□□ -1.82
HOXA1P49639 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
HOXA1P49639 AP002907.1-201ENST00000606361 1430 ntBASIC3.7□□□□□ -1.82
HOXA1P49639 ATP8A2P3-201ENST00000426792 1536 ntBASIC3.7□□□□□ -1.82
HOXA1P49639 CR383658.2-201ENST00000547576 1525 ntBASIC3.7□□□□□ -1.82
HOXA1P49639 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXA1P49639 AL391684.1-202ENST00000641293 1636 ntBASIC3.7□□□□□ -1.82
HOXA1P49639 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXA1P49639 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXA1P49639 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
HOXA1P49639 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.7□□□□□ -1.82
HOXA1P49639 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXA1P49639 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
HOXA1P49639 RNU1-15P-201ENST00000353977 144 ntBASIC3.7□□□□□ -1.82
HOXA1P49639 RN7SKP95-201ENST00000362860 303 ntBASIC3.7□□□□□ -1.82
HOXA1P49639 Y_RNA.194-201ENST00000363985 102 ntBASIC3.7□□□□□ -1.82
HOXA1P49639 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
HOXA1P49639 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
HOXA1P49639 RNU1-106P-201ENST00000384382 164 ntBASIC3.7□□□□□ -1.82
HOXA1P49639 MIR649-201ENST00000384843 97 ntBASIC3.7□□□□□ -1.82
HOXA1P49639 MIR506-201ENST00000384998 124 ntBASIC3.7□□□□□ -1.82
HOXA1P49639 AC016769.3-201ENST00000396562 315 ntBASIC3.7□□□□□ -1.82
HOXA1P49639 RPL31-204ENST00000409038 817 ntTSL 2 BASIC3.7□□□□□ -1.82
HOXA1P49639 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXA1P49639 RNU2-21P-201ENST00000410368 188 ntBASIC3.7□□□□□ -1.82
HOXA1P49639 RN7SKP229-201ENST00000410465 302 ntBASIC3.7□□□□□ -1.82
HOXA1P49639 RN7SKP167-201ENST00000411047 285 ntBASIC3.7□□□□□ -1.82
HOXA1P49639 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC3.7□□□□□ -1.82
HOXA1P49639 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC3.7□□□□□ -1.82
HOXA1P49639 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
HOXA1P49639 CYCSP46-201ENST00000423569 204 ntBASIC3.7□□□□□ -1.82
HOXA1P49639 ZYG11AP1-201ENST00000430329 837 ntBASIC3.7□□□□□ -1.82
HOXA1P49639 MED14P1-201ENST00000430517 648 ntBASIC3.7□□□□□ -1.82
HOXA1P49639 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 89.6 ms