Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AL161449.1-201ENST00000414531 1199 ntBASIC3.66□□□□□ -1.82
SOX3P41225 LUZP4P1-201ENST00000415420 344 ntBASIC3.66□□□□□ -1.82
SOX3P41225 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC3.66□□□□□ -1.82
SOX3P41225 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
SOX3P41225 NPM1P34-201ENST00000428821 893 ntBASIC3.66□□□□□ -1.82
SOX3P41225 HIGD1AP4-201ENST00000430194 280 ntBASIC3.66□□□□□ -1.82
SOX3P41225 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.66□□□□□ -1.82
SOX3P41225 RPS6P12-201ENST00000432491 726 ntBASIC3.66□□□□□ -1.82
SOX3P41225 AC122718.1-201ENST00000439448 744 ntBASIC3.66□□□□□ -1.82
SOX3P41225 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC3.66□□□□□ -1.82
SOX3P41225 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC3.66□□□□□ -1.82
SOX3P41225 MTCO2P25-201ENST00000447065 681 ntBASIC3.66□□□□□ -1.82
SOX3P41225 FAM133DP-201ENST00000464802 691 ntBASIC3.66□□□□□ -1.82
SOX3P41225 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.66□□□□□ -1.82
SOX3P41225 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC3.66□□□□□ -1.82
SOX3P41225 PRELID3BP7-201ENST00000503606 469 ntBASIC3.66□□□□□ -1.82
SOX3P41225 AC091951.3-201ENST00000504093 246 ntBASIC3.66□□□□□ -1.82
SOX3P41225 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC3.66□□□□□ -1.82
SOX3P41225 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC3.66□□□□□ -1.82
SOX3P41225 AC026726.1-201ENST00000512859 601 ntBASIC3.66□□□□□ -1.82
SOX3P41225 MTND4LP31-201ENST00000514859 294 ntBASIC3.66□□□□□ -1.82
SOX3P41225 RNU6-1225P-201ENST00000516336 65 ntBASIC3.66□□□□□ -1.82
SOX3P41225 RNU5A-4P-201ENST00000516588 111 ntBASIC3.66□□□□□ -1.82
SOX3P41225 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC3.66□□□□□ -1.82
SOX3P41225 AC005832.3-201ENST00000537929 631 ntBASIC3.66□□□□□ -1.82
SOX3P41225 AC135001.1-201ENST00000544546 283 ntBASIC3.66□□□□□ -1.82
SOX3P41225 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC3.66□□□□□ -1.82
SOX3P41225 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC3.66□□□□□ -1.82
SOX3P41225 GTF2IP8-201ENST00000560687 584 ntBASIC3.66□□□□□ -1.82
SOX3P41225 AC022968.1-201ENST00000567372 442 ntBASIC3.66□□□□□ -1.82
SOX3P41225 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC3.66□□□□□ -1.82
SOX3P41225 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC3.66□□□□□ -1.82
SOX3P41225 AC093227.2-201ENST00000589357 285 ntBASIC3.66□□□□□ -1.82
SOX3P41225 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC3.66□□□□□ -1.82
SOX3P41225 MRPS35P3-201ENST00000603189 709 ntBASIC3.66□□□□□ -1.82
SOX3P41225 AC078899.5-201ENST00000612475 178 ntBASIC3.66□□□□□ -1.82
SOX3P41225 AC073348.1-201ENST00000623002 331 ntBASIC3.66□□□□□ -1.82
SOX3P41225 AP002791.1-201ENST00000623291 381 ntBASIC3.66□□□□□ -1.82
SOX3P41225 AC026634.1-201ENST00000634369 198 ntBASIC3.66□□□□□ -1.82
SOX3P41225 MIR6715B-201ENST00000637172 77 ntBASIC3.66□□□□□ -1.82
SOX3P41225 OR6C71P-202ENST00000641886 1107 ntBASIC3.66□□□□□ -1.82
SOX3P41225 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
SOX3P41225 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.66□□□□□ -1.82
SOX3P41225 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.66□□□□□ -1.82
SOX3P41225 ST7-221ENST00000465133 2155 ntTSL 5 BASIC3.66□□□□□ -1.82
SOX3P41225 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.66□□□□□ -1.82
SOX3P41225 AC006504.1-201ENST00000562493 3666 ntBASIC3.66□□□□□ -1.82
SOX3P41225 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
SOX3P41225 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
SOX3P41225 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC3.65□□□□□ -1.82
SOX3P41225 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.82
SOX3P41225 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
SOX3P41225 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
SOX3P41225 RNU1-18P-201ENST00000363062 164 ntBASIC3.65□□□□□ -1.83
SOX3P41225 Y_RNA.192-201ENST00000363977 102 ntBASIC3.65□□□□□ -1.83
SOX3P41225 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
SOX3P41225 RNU6-83P-201ENST00000384568 112 ntBASIC3.65□□□□□ -1.83
SOX3P41225 RNU2-21P-201ENST00000410368 188 ntBASIC3.65□□□□□ -1.83
SOX3P41225 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC3.65□□□□□ -1.83
SOX3P41225 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC3.65□□□□□ -1.83
SOX3P41225 AC010099.3-201ENST00000423896 409 ntBASIC3.65□□□□□ -1.83
SOX3P41225 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC3.65□□□□□ -1.83
SOX3P41225 ATP5HP2-201ENST00000433885 485 ntBASIC3.65□□□□□ -1.83
SOX3P41225 RPL7P28-201ENST00000437739 740 ntBASIC3.65□□□□□ -1.83
SOX3P41225 AL359073.1-201ENST00000448036 403 ntBASIC3.65□□□□□ -1.83
SOX3P41225 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC3.65□□□□□ -1.83
SOX3P41225 NDUFA5P7-201ENST00000452914 242 ntBASIC3.65□□□□□ -1.83
SOX3P41225 IFNWP4-201ENST00000453148 294 ntBASIC3.65□□□□□ -1.83
SOX3P41225 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC3.65□□□□□ -1.83
SOX3P41225 RN7SL132P-201ENST00000478131 296 ntBASIC3.65□□□□□ -1.83
SOX3P41225 PPIAP15-201ENST00000479662 484 ntBASIC3.65□□□□□ -1.83
SOX3P41225 RN7SL271P-201ENST00000487601 295 ntBASIC3.65□□□□□ -1.83
SOX3P41225 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC3.65□□□□□ -1.83
SOX3P41225 AC090071.1-201ENST00000507713 644 ntBASIC3.65□□□□□ -1.83
SOX3P41225 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC3.65□□□□□ -1.83
SOX3P41225 AC110792.2-201ENST00000510278 224 ntBASIC3.65□□□□□ -1.83
SOX3P41225 AC005351.1-201ENST00000511152 786 ntBASIC3.65□□□□□ -1.83
SOX3P41225 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC3.65□□□□□ -1.83
SOX3P41225 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
SOX3P41225 NPM1P41-201ENST00000512920 831 ntBASIC3.65□□□□□ -1.83
SOX3P41225 FABP5P12-201ENST00000515543 389 ntBASIC3.65□□□□□ -1.83
SOX3P41225 RN7SKP31-201ENST00000516354 278 ntBASIC3.65□□□□□ -1.83
SOX3P41225 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC3.65□□□□□ -1.83
SOX3P41225 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC3.65□□□□□ -1.83
SOX3P41225 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
SOX3P41225 CA1-215ENST00000522389 551 ntTSL 3 BASIC3.65□□□□□ -1.83
SOX3P41225 AC022790.1-201ENST00000522872 204 ntBASIC3.65□□□□□ -1.83
SOX3P41225 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC3.65□□□□□ -1.83
SOX3P41225 DEFB109D-201ENST00000529497 240 ntBASIC3.65□□□□□ -1.83
SOX3P41225 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC3.65□□□□□ -1.83
SOX3P41225 AC023538.1-201ENST00000534576 736 ntBASIC3.65□□□□□ -1.83
SOX3P41225 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC3.65□□□□□ -1.83
SOX3P41225 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC3.65□□□□□ -1.83
SOX3P41225 AL132657.2-201ENST00000564417 358 ntBASIC3.65□□□□□ -1.83
SOX3P41225 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC3.65□□□□□ -1.83
SOX3P41225 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC3.65□□□□□ -1.83
SOX3P41225 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC3.65□□□□□ -1.83
SOX3P41225 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC3.65□□□□□ -1.83
SOX3P41225 AC025946.2-201ENST00000603398 234 ntBASIC3.65□□□□□ -1.83
SOX3P41225 AC097478.2-201ENST00000610572 514 ntBASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 89.3 ms