Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 EIF4EBP2P3-201ENST00000403144 334 ntBASIC4.57□□□□□ -1.68
HOXC9P31274 AL357075.1-201ENST00000404107 726 ntBASIC4.57□□□□□ -1.68
HOXC9P31274 RNA5SP104-201ENST00000410989 118 ntBASIC4.57□□□□□ -1.68
HOXC9P31274 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC4.57□□□□□ -1.68
HOXC9P31274 OR2X1P-201ENST00000421144 687 ntBASIC4.57□□□□□ -1.68
HOXC9P31274 RPS26P47-201ENST00000427219 348 ntBASIC4.57□□□□□ -1.68
HOXC9P31274 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC4.57□□□□□ -1.68
HOXC9P31274 USP9YP24-201ENST00000434374 697 ntBASIC4.57□□□□□ -1.68
HOXC9P31274 RPS7P5-201ENST00000441482 581 ntBASIC4.57□□□□□ -1.68
HOXC9P31274 USP9YP17-201ENST00000444617 696 ntBASIC4.57□□□□□ -1.68
HOXC9P31274 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC4.57□□□□□ -1.68
HOXC9P31274 ZNF736P8Y-201ENST00000451913 669 ntBASIC4.57□□□□□ -1.68
HOXC9P31274 OFD1P7Y-201ENST00000454643 1155 ntBASIC4.57□□□□□ -1.68
HOXC9P31274 DNAJC19P1-201ENST00000455312 319 ntBASIC4.57□□□□□ -1.68
HOXC9P31274 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC4.57□□□□□ -1.68
HOXC9P31274 RPL21P131-201ENST00000497298 483 ntBASIC4.57□□□□□ -1.68
HOXC9P31274 AC020699.1-201ENST00000505161 445 ntBASIC4.57□□□□□ -1.68
HOXC9P31274 AC021678.1-201ENST00000505195 936 ntBASIC4.57□□□□□ -1.68
HOXC9P31274 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC4.57□□□□□ -1.68
HOXC9P31274 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC4.57□□□□□ -1.68
HOXC9P31274 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC4.57□□□□□ -1.68
HOXC9P31274 OR8K4P-201ENST00000534608 872 ntBASIC4.57□□□□□ -1.68
HOXC9P31274 AC139103.1-201ENST00000534696 1030 ntBASIC4.57□□□□□ -1.68
HOXC9P31274 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
HOXC9P31274 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC4.57□□□□□ -1.68
HOXC9P31274 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC4.57□□□□□ -1.68
HOXC9P31274 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC4.57□□□□□ -1.68
HOXC9P31274 MIR5004-201ENST00000579078 107 ntBASIC4.57□□□□□ -1.68
HOXC9P31274 AC115085.1-201ENST00000588924 229 ntBASIC4.57□□□□□ -1.68
HOXC9P31274 AP001542.2-201ENST00000593141 364 ntBASIC4.57□□□□□ -1.68
HOXC9P31274 AC123786.2-201ENST00000603459 275 ntBASIC4.57□□□□□ -1.68
HOXC9P31274 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC4.57□□□□□ -1.68
HOXC9P31274 AC123767.1-202ENST00000620407 817 ntBASIC4.57□□□□□ -1.68
HOXC9P31274 AL109659.3-201ENST00000624985 950 ntBASIC4.57□□□□□ -1.68
HOXC9P31274 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC4.57□□□□□ -1.68
HOXC9P31274 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
HOXC9P31274 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
HOXC9P31274 NSRP1P1-201ENST00000444067 1693 ntBASIC4.57□□□□□ -1.68
HOXC9P31274 Z83843.1-201ENST00000604070 3685 ntBASIC4.57□□□□□ -1.68
HOXC9P31274 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
HOXC9P31274 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.56□□□□□ -1.68
HOXC9P31274 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
HOXC9P31274 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
HOXC9P31274 AC010329.2-201ENST00000595195 2737 ntBASIC4.56□□□□□ -1.68
HOXC9P31274 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
HOXC9P31274 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
HOXC9P31274 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC4.56□□□□□ -1.68
HOXC9P31274 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC4.56□□□□□ -1.68
HOXC9P31274 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
HOXC9P31274 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC4.56□□□□□ -1.68
HOXC9P31274 RNU6-549P-201ENST00000384433 107 ntBASIC4.56□□□□□ -1.68
HOXC9P31274 AL592310.1-201ENST00000414330 671 ntBASIC4.56□□□□□ -1.68
HOXC9P31274 RPS7P9-201ENST00000414704 586 ntBASIC4.56□□□□□ -1.68
HOXC9P31274 SSR1P2-201ENST00000415208 787 ntBASIC4.56□□□□□ -1.68
HOXC9P31274 AC073069.1-201ENST00000428657 441 ntBASIC4.56□□□□□ -1.68
HOXC9P31274 MTND2P5-201ENST00000432656 1006 ntBASIC4.56□□□□□ -1.68
HOXC9P31274 AL353597.2-202ENST00000434901 373 ntBASIC4.56□□□□□ -1.68
HOXC9P31274 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC4.56□□□□□ -1.68
HOXC9P31274 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC4.56□□□□□ -1.68
HOXC9P31274 MTND6P18-201ENST00000439477 513 ntBASIC4.56□□□□□ -1.68
HOXC9P31274 UBE2V1P5-201ENST00000440070 405 ntBASIC4.56□□□□□ -1.68
HOXC9P31274 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC4.56□□□□□ -1.68
HOXC9P31274 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC4.56□□□□□ -1.68
HOXC9P31274 RPS29P31-201ENST00000446147 164 ntBASIC4.56□□□□□ -1.68
HOXC9P31274 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC4.56□□□□□ -1.68
HOXC9P31274 SNORA59A-201ENST00000459326 152 ntBASIC4.56□□□□□ -1.68
HOXC9P31274 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC4.56□□□□□ -1.68
HOXC9P31274 AC118282.1-201ENST00000506408 765 ntBASIC4.56□□□□□ -1.68
HOXC9P31274 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC4.56□□□□□ -1.68
HOXC9P31274 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
HOXC9P31274 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
HOXC9P31274 snoZ278.1-201ENST00000517059 112 ntBASIC4.56□□□□□ -1.68
HOXC9P31274 AP000926.4-201ENST00000527351 454 ntBASIC4.56□□□□□ -1.68
HOXC9P31274 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC4.56□□□□□ -1.68
HOXC9P31274 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC4.56□□□□□ -1.68
HOXC9P31274 MTATP6P24-201ENST00000576835 677 ntBASIC4.56□□□□□ -1.68
HOXC9P31274 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC4.56□□□□□ -1.68
HOXC9P31274 PSMA6P4-201ENST00000603247 718 ntBASIC4.56□□□□□ -1.68
HOXC9P31274 AL583856.2-201ENST00000606298 543 ntBASIC4.56□□□□□ -1.68
HOXC9P31274 AC116447.1-201ENST00000613153 453 ntBASIC4.56□□□□□ -1.68
HOXC9P31274 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC4.56□□□□□ -1.68
HOXC9P31274 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC4.56□□□□□ -1.68
HOXC9P31274 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC4.56□□□□□ -1.68
HOXC9P31274 PCF11-AS1-201ENST00000602322 1516 ntBASIC4.56□□□□□ -1.68
HOXC9P31274 AC073073.2-201ENST00000609827 2578 ntBASIC4.56□□□□□ -1.68
HOXC9P31274 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
HOXC9P31274 MTCO1P6-201ENST00000481192 1384 ntBASIC4.55□□□□□ -1.68
HOXC9P31274 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC4.55□□□□□ -1.68
HOXC9P31274 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
HOXC9P31274 Y_RNA.111-201ENST00000363248 100 ntBASIC4.55□□□□□ -1.68
HOXC9P31274 RNU6-77P-201ENST00000410554 91 ntBASIC4.55□□□□□ -1.68
HOXC9P31274 AC063979.1-201ENST00000415539 377 ntBASIC4.55□□□□□ -1.68
HOXC9P31274 AC234782.4-201ENST00000417646 1048 ntBASIC4.55□□□□□ -1.68
HOXC9P31274 TRGV6-201ENST00000417928 299 ntBASIC4.55□□□□□ -1.68
HOXC9P31274 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC4.55□□□□□ -1.68
HOXC9P31274 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC4.55□□□□□ -1.68
HOXC9P31274 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC4.55□□□□□ -1.68
HOXC9P31274 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC4.55□□□□□ -1.68
HOXC9P31274 ELOCP10-201ENST00000440624 327 ntBASIC4.55□□□□□ -1.68
HOXC9P31274 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC4.55□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 90.5 ms