Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXD3P31249 AC040958.1-201ENST00000561102 201 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXD3P31249 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXD3P31249 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXD3P31249 AC091042.1-201ENST00000579213 173 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC3.82□□□□□ -1.8
HOXD3P31249 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXD3P31249 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC3.82□□□□□ -1.8
HOXD3P31249 AL606834.2-201ENST00000602954 668 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 AC005191.1-201ENST00000603950 358 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 AL161729.4-201ENST00000604650 476 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXD3P31249 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXD3P31249 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXD3P31249 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXD3P31249 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXD3P31249 AC000123.2-201ENST00000623124 461 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC3.82□□□□□ -1.8
HOXD3P31249 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
HOXD3P31249 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXD3P31249 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HOXD3P31249 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC3.82□□□□□ -1.8
HOXD3P31249 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
HOXD3P31249 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC3.82□□□□□ -1.8
HOXD3P31249 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HOXD3P31249 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC3.82□□□□□ -1.8
HOXD3P31249 CARF-208ENST00000428585 2513 ntTSL 2 BASIC3.82□□□□□ -1.8
HOXD3P31249 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXD3P31249 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
HOXD3P31249 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HOXD3P31249 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HOXD3P31249 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC3.82□□□□□ -1.8
HOXD3P31249 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXD3P31249 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC3.81□□□□□ -1.8
HOXD3P31249 AC074029.4-201ENST00000624796 1859 ntBASIC3.81□□□□□ -1.8
HOXD3P31249 LINC01109-201ENST00000603837 3081 ntBASIC3.81□□□□□ -1.8
HOXD3P31249 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
HOXD3P31249 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
HOXD3P31249 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
HOXD3P31249 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
HOXD3P31249 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
HOXD3P31249 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC3.81□□□□□ -1.8
HOXD3P31249 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
HOXD3P31249 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
HOXD3P31249 AP002001.2-201ENST00000529025 1469 ntBASIC3.81□□□□□ -1.8
HOXD3P31249 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
HOXD3P31249 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
HOXD3P31249 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.81□□□□□ -1.8
HOXD3P31249 RPL32P3-201ENST00000359025 275 ntBASIC3.81□□□□□ -1.8
HOXD3P31249 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
HOXD3P31249 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
HOXD3P31249 SNORA73.1-201ENST00000363107 205 ntBASIC3.81□□□□□ -1.8
HOXD3P31249 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC3.81□□□□□ -1.8
HOXD3P31249 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC3.81□□□□□ -1.8
HOXD3P31249 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
HOXD3P31249 BTF3P7-201ENST00000407097 488 ntBASIC3.81□□□□□ -1.8
HOXD3P31249 RN7SKP266-201ENST00000410232 287 ntBASIC3.81□□□□□ -1.8
HOXD3P31249 RNU6-195P-201ENST00000411352 109 ntBASIC3.81□□□□□ -1.8
HOXD3P31249 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXD3P31249 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC3.81□□□□□ -1.8
HOXD3P31249 RPS3AP9-201ENST00000417027 792 ntBASIC3.81□□□□□ -1.8
HOXD3P31249 BX295541.1-201ENST00000417774 250 ntBASIC3.81□□□□□ -1.8
HOXD3P31249 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC3.81□□□□□ -1.8
HOXD3P31249 AC009480.2-201ENST00000422916 432 ntBASIC3.81□□□□□ -1.8
HOXD3P31249 AC007742.1-201ENST00000425789 329 ntBASIC3.81□□□□□ -1.8
HOXD3P31249 AC096632.1-201ENST00000427395 310 ntBASIC3.81□□□□□ -1.8
HOXD3P31249 AC068287.1-201ENST00000430283 295 ntBASIC3.81□□□□□ -1.8
HOXD3P31249 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXD3P31249 ELOCP26-201ENST00000436067 329 ntBASIC3.81□□□□□ -1.8
HOXD3P31249 UBE2V1P8-201ENST00000437166 265 ntBASIC3.81□□□□□ -1.8
HOXD3P31249 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXD3P31249 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXD3P31249 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXD3P31249 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC3.81□□□□□ -1.8
HOXD3P31249 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXD3P31249 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
HOXD3P31249 CYCSP24-201ENST00000445119 316 ntBASIC3.81□□□□□ -1.8
HOXD3P31249 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC3.81□□□□□ -1.8
HOXD3P31249 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXD3P31249 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC3.81□□□□□ -1.8
HOXD3P31249 TPT1P12-201ENST00000448968 492 ntBASIC3.81□□□□□ -1.8
HOXD3P31249 GAPDHP17-201ENST00000449858 1001 ntBASIC3.81□□□□□ -1.8
HOXD3P31249 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
HOXD3P31249 AL691482.1-201ENST00000453255 87 ntBASIC3.81□□□□□ -1.8
HOXD3P31249 snoU109.1-201ENST00000459339 135 ntBASIC3.81□□□□□ -1.8
HOXD3P31249 AC006967.1-201ENST00000467608 589 ntBASIC3.81□□□□□ -1.8
HOXD3P31249 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
HOXD3P31249 AC010683.1-201ENST00000473673 378 ntBASIC3.81□□□□□ -1.8
HOXD3P31249 AC004924.1-201ENST00000480160 781 ntBASIC3.81□□□□□ -1.8
HOXD3P31249 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC3.81□□□□□ -1.8
HOXD3P31249 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXD3P31249 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC3.81□□□□□ -1.8
HOXD3P31249 MAL2-201ENST00000522112 573 ntTSL 4 BASIC3.81□□□□□ -1.8
HOXD3P31249 OR5AP1P-201ENST00000529730 940 ntBASIC3.81□□□□□ -1.8
HOXD3P31249 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC3.81□□□□□ -1.8
HOXD3P31249 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC3.81□□□□□ -1.8
HOXD3P31249 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC3.81□□□□□ -1.8
HOXD3P31249 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXD3P31249 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms