Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 RGS4-207ENST00000527809 817 ntTSL 4 BASIC2.88□□□□□ -1.95
COL5A1P20908 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
COL5A1P20908 AC016993.1-201ENST00000547033 1258 ntTSL 3 BASIC2.88□□□□□ -1.95
COL5A1P20908 AC100814.1-201ENST00000606963 623 ntBASIC2.88□□□□□ -1.95
COL5A1P20908 AC004832.5-201ENST00000608677 401 ntBASIC2.88□□□□□ -1.95
COL5A1P20908 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC2.88□□□□□ -1.95
COL5A1P20908 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC2.88□□□□□ -1.95
COL5A1P20908 MAPK10-373ENST00000641983 6772 ntBASIC2.87□□□□□ -1.95
COL5A1P20908 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC2.87□□□□□ -1.95
COL5A1P20908 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
COL5A1P20908 SNORA46-201ENST00000384762 135 ntBASIC2.87□□□□□ -1.95
COL5A1P20908 MIR504-201ENST00000385065 83 ntBASIC2.87□□□□□ -1.95
COL5A1P20908 AL512430.2-201ENST00000406786 339 ntBASIC2.87□□□□□ -1.95
COL5A1P20908 AC019070.1-201ENST00000415008 1024 ntBASIC2.87□□□□□ -1.95
COL5A1P20908 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC2.87□□□□□ -1.95
COL5A1P20908 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC2.87□□□□□ -1.95
COL5A1P20908 snoU13.26-201ENST00000459452 105 ntBASIC2.87□□□□□ -1.95
COL5A1P20908 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.87□□□□□ -1.95
COL5A1P20908 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC2.87□□□□□ -1.95
COL5A1P20908 RN7SKP272-201ENST00000516988 232 ntBASIC2.87□□□□□ -1.95
COL5A1P20908 AC109329.2-201ENST00000519658 482 ntBASIC2.87□□□□□ -1.95
COL5A1P20908 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC2.87□□□□□ -1.95
COL5A1P20908 OR5G4P-201ENST00000525251 760 ntBASIC2.87□□□□□ -1.95
COL5A1P20908 OR4C2P-201ENST00000530855 1064 ntBASIC2.87□□□□□ -1.95
COL5A1P20908 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC2.87□□□□□ -1.95
COL5A1P20908 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
COL5A1P20908 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC2.87□□□□□ -1.95
COL5A1P20908 AC079600.2-201ENST00000550076 130 ntBASIC2.87□□□□□ -1.95
COL5A1P20908 AC067805.1-201ENST00000559344 470 ntBASIC2.87□□□□□ -1.95
COL5A1P20908 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC2.87□□□□□ -1.95
COL5A1P20908 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC2.87□□□□□ -1.95
COL5A1P20908 AC245128.3-201ENST00000594721 748 ntBASIC2.87□□□□□ -1.95
COL5A1P20908 AL021368.1-201ENST00000607490 540 ntBASIC2.87□□□□□ -1.95
COL5A1P20908 AL590808.1-201ENST00000618696 141 ntBASIC2.87□□□□□ -1.95
COL5A1P20908 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC2.87□□□□□ -1.95
COL5A1P20908 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
COL5A1P20908 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC2.87□□□□□ -1.95
COL5A1P20908 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC2.87□□□□□ -1.95
COL5A1P20908 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
COL5A1P20908 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
COL5A1P20908 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
COL5A1P20908 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC2.87□□□□□ -1.95
COL5A1P20908 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
COL5A1P20908 RNU6-984P-201ENST00000363236 109 ntBASIC2.86□□□□□ -1.95
COL5A1P20908 RNU1-87P-201ENST00000363727 170 ntBASIC2.86□□□□□ -1.95
COL5A1P20908 MIR887-201ENST00000401258 79 ntBASIC2.86□□□□□ -1.95
COL5A1P20908 AL356057.1-202ENST00000402263 756 ntBASIC2.86□□□□□ -1.95
COL5A1P20908 U3.42-201ENST00000408746 214 ntBASIC2.86□□□□□ -1.95
COL5A1P20908 RNA5SP247-201ENST00000411181 105 ntBASIC2.86□□□□□ -1.95
COL5A1P20908 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
COL5A1P20908 FAM204CP-201ENST00000424489 642 ntBASIC2.86□□□□□ -1.95
COL5A1P20908 AC022018.1-201ENST00000430685 241 ntBASIC2.86□□□□□ -1.95
COL5A1P20908 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC2.86□□□□□ -1.95
COL5A1P20908 MTND6P18-201ENST00000439477 513 ntBASIC2.86□□□□□ -1.95
COL5A1P20908 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC2.86□□□□□ -1.95
COL5A1P20908 OR9N1P-201ENST00000491296 333 ntBASIC2.86□□□□□ -1.95
COL5A1P20908 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC2.86□□□□□ -1.95
COL5A1P20908 AP000916.1-201ENST00000533869 835 ntBASIC2.86□□□□□ -1.95
COL5A1P20908 AC107016.2-201ENST00000547968 190 ntBASIC2.86□□□□□ -1.95
COL5A1P20908 DISC1FP1-203ENST00000562678 796 ntTSL 3 BASIC2.86□□□□□ -1.95
COL5A1P20908 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC2.86□□□□□ -1.95
COL5A1P20908 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC2.86□□□□□ -1.95
COL5A1P20908 AC080188.3-201ENST00000624842 748 ntBASIC2.86□□□□□ -1.95
COL5A1P20908 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC2.86□□□□□ -1.95
COL5A1P20908 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
COL5A1P20908 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC2.86□□□□□ -1.95
COL5A1P20908 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
COL5A1P20908 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
COL5A1P20908 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
COL5A1P20908 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
COL5A1P20908 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
COL5A1P20908 AL589826.1-201ENST00000340697 249 ntBASIC2.86□□□□□ -1.95
COL5A1P20908 RNU6ATAC3P-201ENST00000387974 126 ntBASIC2.86□□□□□ -1.95
COL5A1P20908 AC245291.1-201ENST00000419501 328 ntBASIC2.86□□□□□ -1.95
COL5A1P20908 AL603825.1-201ENST00000438481 80 ntBASIC2.86□□□□□ -1.95
COL5A1P20908 AC245517.2-201ENST00000442890 346 ntBASIC2.86□□□□□ -1.95
COL5A1P20908 MTND3P6-201ENST00000485242 339 ntBASIC2.86□□□□□ -1.95
COL5A1P20908 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC2.86□□□□□ -1.95
COL5A1P20908 RPS27AP18-201ENST00000515536 459 ntBASIC2.86□□□□□ -1.95
COL5A1P20908 AP002812.4-201ENST00000532139 286 ntBASIC2.86□□□□□ -1.95
COL5A1P20908 SNRPGP1-201ENST00000553864 222 ntBASIC2.86□□□□□ -1.95
COL5A1P20908 AL109741.3-201ENST00000561748 592 ntBASIC2.86□□□□□ -1.95
COL5A1P20908 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC2.86□□□□□ -1.95
COL5A1P20908 AC011492.1-201ENST00000600023 315 ntBASIC2.86□□□□□ -1.95
COL5A1P20908 AC017002.4-201ENST00000604721 1525 ntBASIC2.86□□□□□ -1.95
COL5A1P20908 AC008725.1-201ENST00000605123 2263 ntBASIC2.85□□□□□ -1.95
COL5A1P20908 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC2.85□□□□□ -1.95
COL5A1P20908 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
COL5A1P20908 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC2.85□□□□□ -1.95
COL5A1P20908 RNA5SP383-201ENST00000362934 120 ntBASIC2.85□□□□□ -1.95
COL5A1P20908 AL353692.2-201ENST00000407054 335 ntBASIC2.85□□□□□ -1.95
COL5A1P20908 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC2.85□□□□□ -1.95
COL5A1P20908 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC2.85□□□□□ -1.95
COL5A1P20908 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC2.85□□□□□ -1.95
COL5A1P20908 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.85□□□□□ -1.95
COL5A1P20908 NAP1L4P3-201ENST00000432820 1147 ntBASIC2.85□□□□□ -1.95
COL5A1P20908 MTND5P24-201ENST00000438892 1767 ntBASIC2.85□□□□□ -1.95
COL5A1P20908 HMGB3P6-201ENST00000444896 598 ntBASIC2.85□□□□□ -1.95
COL5A1P20908 ELF2P3-201ENST00000445099 1506 ntBASIC2.85□□□□□ -1.95
COL5A1P20908 HESX1-202ENST00000473921 757 ntTSL 5 BASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 116.7 ms