Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
VCANP13611 AC000123.3-201ENST00000624029 4975 ntBASIC2.82□□□□□ -1.96
VCANP13611 AC018555.1-201ENST00000567548 1980 ntBASIC2.82□□□□□ -1.96
VCANP13611 EXPH5-203ENST00000525344 6542 ntAPPRIS ALT2 TSL 1 (best) BASIC2.82□□□□□ -1.96
VCANP13611 MIR518C-201ENST00000384822 101 ntBASIC2.82□□□□□ -1.96
VCANP13611 U3.23-201ENST00000391132 200 ntBASIC2.82□□□□□ -1.96
VCANP13611 MRPS18BP2-201ENST00000434310 759 ntBASIC2.82□□□□□ -1.96
VCANP13611 AL162389.1-201ENST00000449233 177 ntBASIC2.82□□□□□ -1.96
VCANP13611 MIR4738-201ENST00000579134 87 ntBASIC2.82□□□□□ -1.96
VCANP13611 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC2.82□□□□□ -1.96
VCANP13611 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
VCANP13611 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC2.82□□□□□ -1.96
VCANP13611 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC2.82□□□□□ -1.96
VCANP13611 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
VCANP13611 SNORD114-26-201ENST00000363543 72 ntBASIC2.81□□□□□ -1.96
VCANP13611 RPL7P25-201ENST00000404151 721 ntBASIC2.81□□□□□ -1.96
VCANP13611 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC2.81□□□□□ -1.96
VCANP13611 Z98742.2-201ENST00000431564 187 ntBASIC2.81□□□□□ -1.96
VCANP13611 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.81□□□□□ -1.96
VCANP13611 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
VCANP13611 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
VCANP13611 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC2.81□□□□□ -1.96
VCANP13611 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
VCANP13611 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
VCANP13611 AP002088.1-201ENST00000382740 395 ntBASIC2.81□□□□□ -1.96
VCANP13611 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
VCANP13611 AL109741.3-201ENST00000561748 592 ntBASIC2.81□□□□□ -1.96
VCANP13611 Z82195.1-201ENST00000604558 398 ntBASIC2.81□□□□□ -1.96
VCANP13611 AL035425.3-201ENST00000564206 4996 ntBASIC2.81□□□□□ -1.96
VCANP13611 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
VCANP13611 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
VCANP13611 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC2.81□□□□□ -1.96
VCANP13611 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
VCANP13611 AL353705.4-201ENST00000449661 238 ntBASIC2.81□□□□□ -1.96
VCANP13611 ATP5J2P3-201ENST00000451550 258 ntBASIC2.81□□□□□ -1.96
VCANP13611 RPL12P26-201ENST00000452430 487 ntBASIC2.81□□□□□ -1.96
VCANP13611 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC2.81□□□□□ -1.96
VCANP13611 AC010469.1-201ENST00000463864 576 ntBASIC2.81□□□□□ -1.96
VCANP13611 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC2.81□□□□□ -1.96
VCANP13611 AC008716.1-201ENST00000511084 513 ntBASIC2.81□□□□□ -1.96
VCANP13611 AC103810.6-201ENST00000606708 136 ntBASIC2.81□□□□□ -1.96
VCANP13611 AL136981.2-201ENST00000617319 734 ntBASIC2.81□□□□□ -1.96
VCANP13611 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
VCANP13611 AC007677.1-201ENST00000445757 515 ntBASIC2.8□□□□□ -1.96
VCANP13611 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC2.8□□□□□ -1.96
VCANP13611 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC2.8□□□□□ -1.96
VCANP13611 RANP3-201ENST00000530970 276 ntBASIC2.8□□□□□ -1.96
VCANP13611 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
VCANP13611 AC009039.2-201ENST00000624524 529 ntBASIC2.8□□□□□ -1.96
VCANP13611 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC2.8□□□□□ -1.96
VCANP13611 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC2.8□□□□□ -1.96
VCANP13611 ANKRD17-203ENST00000509867 8105 ntAPPRIS ALT2 TSL 1 (best) BASIC2.8□□□□□ -1.96
VCANP13611 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
VCANP13611 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.8□□□□□ -1.96
VCANP13611 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC2.8□□□□□ -1.96
VCANP13611 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC2.8□□□□□ -1.96
VCANP13611 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC2.8□□□□□ -1.96
VCANP13611 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC2.8□□□□□ -1.96
VCANP13611 RPS21P8-201ENST00000413365 247 ntBASIC2.8□□□□□ -1.96
VCANP13611 USP9YP6-201ENST00000413550 854 ntBASIC2.8□□□□□ -1.96
VCANP13611 RPS12P2-201ENST00000439728 269 ntBASIC2.8□□□□□ -1.96
VCANP13611 USP9YP34-201ENST00000453983 808 ntBASIC2.8□□□□□ -1.96
VCANP13611 AC010401.1-201ENST00000463867 348 ntBASIC2.8□□□□□ -1.96
VCANP13611 BNIP3P38-201ENST00000601117 544 ntBASIC2.8□□□□□ -1.96
VCANP13611 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC2.8□□□□□ -1.96
VCANP13611 NPM1P10-201ENST00000398310 865 ntBASIC2.8□□□□□ -1.96
VCANP13611 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC2.8□□□□□ -1.96
VCANP13611 AC009101.1-201ENST00000568135 242 ntBASIC2.8□□□□□ -1.96
VCANP13611 AC004014.2-201ENST00000623718 5122 ntBASIC2.79□□□□□ -1.96
VCANP13611 AP006437.1-201ENST00000641440 3685 ntBASIC2.79□□□□□ -1.96
VCANP13611 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC2.79□□□□□ -1.96
VCANP13611 AC010300.1-201ENST00000600671 5134 ntBASIC2.79□□□□□ -1.96
VCANP13611 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC2.79□□□□□ -1.96
VCANP13611 BTF3P7-201ENST00000407097 488 ntBASIC2.79□□□□□ -1.96
VCANP13611 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC2.79□□□□□ -1.96
VCANP13611 Z99127.2-201ENST00000441426 334 ntBASIC2.79□□□□□ -1.96
VCANP13611 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC2.79□□□□□ -1.96
VCANP13611 AC027290.2-201ENST00000623210 18662 ntBASIC2.79□□□□□ -1.96
VCANP13611 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
VCANP13611 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
VCANP13611 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
VCANP13611 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.79□□□□□ -1.96
VCANP13611 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.79□□□□□ -1.96
VCANP13611 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
VCANP13611 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC2.79□□□□□ -1.96
VCANP13611 MTCO1P52-201ENST00000433928 531 ntBASIC2.79□□□□□ -1.96
VCANP13611 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC2.79□□□□□ -1.96
VCANP13611 SYT14P1-201ENST00000481459 721 ntBASIC2.79□□□□□ -1.96
VCANP13611 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
VCANP13611 RN7SKP96-201ENST00000516948 297 ntBASIC2.79□□□□□ -1.96
VCANP13611 RN7SL622P-201ENST00000585292 275 ntBASIC2.79□□□□□ -1.96
VCANP13611 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
VCANP13611 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
VCANP13611 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
VCANP13611 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC2.78□□□□□ -1.96
VCANP13611 U8.13-201ENST00000390842 128 ntBASIC2.78□□□□□ -1.96
VCANP13611 AC011242.1-201ENST00000433596 1158 ntBASIC2.78□□□□□ -1.96
VCANP13611 RPL5P16-201ENST00000471467 790 ntBASIC2.78□□□□□ -1.96
VCANP13611 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.96
VCANP13611 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 119.2 ms