Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
COL6A3P12111 MFSD8-233ENST00000641482 4860 ntBASIC2.86□□□□□ -1.95
COL6A3P12111 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC2.86□□□□□ -1.95
COL6A3P12111 FAM35BP-202ENST00000497389 3337 ntBASIC2.86□□□□□ -1.95
COL6A3P12111 EXPH5-203ENST00000525344 6542 ntAPPRIS ALT2 TSL 1 (best) BASIC2.86□□□□□ -1.95
COL6A3P12111 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC2.86□□□□□ -1.95
COL6A3P12111 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
COL6A3P12111 AC007677.1-201ENST00000445757 515 ntBASIC2.86□□□□□ -1.95
COL6A3P12111 RPS26P3-201ENST00000470205 348 ntBASIC2.86□□□□□ -1.95
COL6A3P12111 AP003102.1-201ENST00000525638 661 ntBASIC2.86□□□□□ -1.95
COL6A3P12111 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC2.86□□□□□ -1.95
COL6A3P12111 AC104237.2-201ENST00000612456 443 ntBASIC2.86□□□□□ -1.95
COL6A3P12111 uc_338.32-201ENST00000615087 172 ntBASIC2.86□□□□□ -1.95
COL6A3P12111 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
COL6A3P12111 SLC30A6-201ENST00000282587 5089 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
COL6A3P12111 TAB3P1-202ENST00000452645 1634 ntBASIC2.86□□□□□ -1.95
COL6A3P12111 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC2.86□□□□□ -1.95
COL6A3P12111 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
COL6A3P12111 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC2.86□□□□□ -1.95
COL6A3P12111 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
COL6A3P12111 AC002075.2-201ENST00000425207 252 ntBASIC2.86□□□□□ -1.95
COL6A3P12111 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC2.86□□□□□ -1.95
COL6A3P12111 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC2.86□□□□□ -1.95
COL6A3P12111 AC099560.2-201ENST00000457554 255 ntBASIC2.86□□□□□ -1.95
COL6A3P12111 RNU4ATAC6P-201ENST00000516592 126 ntBASIC2.86□□□□□ -1.95
COL6A3P12111 SULT1C2P2-201ENST00000562517 294 ntBASIC2.86□□□□□ -1.95
COL6A3P12111 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.86□□□□□ -1.95
COL6A3P12111 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
COL6A3P12111 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC2.86□□□□□ -1.95
COL6A3P12111 AC009237.17-201ENST00000618111 748 ntBASIC2.86□□□□□ -1.95
COL6A3P12111 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
COL6A3P12111 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
COL6A3P12111 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC2.85□□□□□ -1.95
COL6A3P12111 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC2.85□□□□□ -1.95
COL6A3P12111 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
COL6A3P12111 MIR448-201ENST00000362131 111 ntBASIC2.85□□□□□ -1.95
COL6A3P12111 Y_RNA.178-201ENST00000363832 102 ntBASIC2.85□□□□□ -1.95
COL6A3P12111 USP12PY-201ENST00000427677 1064 ntBASIC2.85□□□□□ -1.95
COL6A3P12111 RN7SL636P-201ENST00000497504 294 ntBASIC2.85□□□□□ -1.95
COL6A3P12111 OR7A8P-201ENST00000595427 913 ntBASIC2.85□□□□□ -1.95
COL6A3P12111 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC2.85□□□□□ -1.95
COL6A3P12111 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
COL6A3P12111 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC2.85□□□□□ -1.95
COL6A3P12111 AL109809.4-201ENST00000603520 2185 ntBASIC2.85□□□□□ -1.95
COL6A3P12111 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
COL6A3P12111 RPL23AP71-201ENST00000470966 469 ntBASIC2.85□□□□□ -1.95
COL6A3P12111 AC068781.1-201ENST00000488231 618 ntBASIC2.85□□□□□ -1.95
COL6A3P12111 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC2.85□□□□□ -1.95
COL6A3P12111 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
COL6A3P12111 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC2.85□□□□□ -1.95
COL6A3P12111 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
COL6A3P12111 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
COL6A3P12111 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC2.84□□□□□ -1.95
COL6A3P12111 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC2.84□□□□□ -1.95
COL6A3P12111 MTCO1P52-201ENST00000433928 531 ntBASIC2.84□□□□□ -1.95
COL6A3P12111 YWHAQP9-201ENST00000445891 512 ntBASIC2.84□□□□□ -1.95
COL6A3P12111 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC2.84□□□□□ -1.95
COL6A3P12111 AC117522.2-201ENST00000510049 657 ntBASIC2.84□□□□□ -1.95
COL6A3P12111 RNA5SP490-201ENST00000517141 136 ntBASIC2.84□□□□□ -1.95
COL6A3P12111 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC2.84□□□□□ -1.95
COL6A3P12111 MIR486-1-201ENST00000612171 68 ntBASIC2.84□□□□□ -1.95
COL6A3P12111 MIR4727-201ENST00000622232 55 ntBASIC2.84□□□□□ -1.95
COL6A3P12111 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC2.84□□□□□ -1.95
COL6A3P12111 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
COL6A3P12111 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC2.84□□□□□ -1.95
COL6A3P12111 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC2.84□□□□□ -1.95
COL6A3P12111 RNU6-283P-201ENST00000364788 107 ntBASIC2.84□□□□□ -1.95
COL6A3P12111 BTF3P7-201ENST00000407097 488 ntBASIC2.84□□□□□ -1.95
COL6A3P12111 RPL21P109-201ENST00000422213 475 ntBASIC2.84□□□□□ -1.95
COL6A3P12111 AC078817.1-201ENST00000492623 435 ntBASIC2.84□□□□□ -1.95
COL6A3P12111 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC2.84□□□□□ -1.95
COL6A3P12111 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC2.84□□□□□ -1.95
COL6A3P12111 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC2.84□□□□□ -1.96
COL6A3P12111 AC017071.1-201ENST00000564407 2204 ntBASIC2.84□□□□□ -1.96
COL6A3P12111 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.84□□□□□ -1.96
COL6A3P12111 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
COL6A3P12111 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
COL6A3P12111 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
COL6A3P12111 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC2.84□□□□□ -1.96
COL6A3P12111 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.84□□□□□ -1.96
COL6A3P12111 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
COL6A3P12111 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
COL6A3P12111 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC2.83□□□□□ -1.96
COL6A3P12111 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC2.83□□□□□ -1.96
COL6A3P12111 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.83□□□□□ -1.96
COL6A3P12111 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.83□□□□□ -1.96
COL6A3P12111 GLS-203ENST00000409215 632 ntTSL 4 BASIC2.83□□□□□ -1.96
COL6A3P12111 RNA5SP104-201ENST00000410989 118 ntBASIC2.83□□□□□ -1.96
COL6A3P12111 AL160275.2-201ENST00000412010 394 ntBASIC2.83□□□□□ -1.96
COL6A3P12111 Z99127.2-201ENST00000441426 334 ntBASIC2.83□□□□□ -1.96
COL6A3P12111 OR5AP1P-201ENST00000529730 940 ntBASIC2.83□□□□□ -1.96
COL6A3P12111 ADAM3A-203ENST00000461344 2157 ntBASIC2.83□□□□□ -1.96
COL6A3P12111 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
COL6A3P12111 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC2.83□□□□□ -1.96
COL6A3P12111 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
COL6A3P12111 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.83□□□□□ -1.96
COL6A3P12111 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.83□□□□□ -1.96
COL6A3P12111 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
COL6A3P12111 SNORA26.9-201ENST00000391322 122 ntBASIC2.83□□□□□ -1.96
COL6A3P12111 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC2.83□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms