Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 RPL12P11-201ENST00000439970 501 ntBASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 RPL7P12-201ENST00000446719 750 ntBASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 RPL23AP20-201ENST00000447965 421 ntBASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 SUMO1P2-201ENST00000452524 304 ntBASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 AC011225.1-201ENST00000457751 369 ntBASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 MTND5P22-201ENST00000458380 195 ntBASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 Y_RNA.631-201ENST00000459607 101 ntBASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 Y_RNA.711-201ENST00000516993 102 ntBASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 AC004817.2-201ENST00000561794 651 ntBASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 AC245014.2-201ENST00000603689 287 ntBASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 PRELID3BP8-201ENST00000604148 295 ntBASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 AC246785.4-201ENST00000605374 287 ntBASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 AC092650.2-201ENST00000619984 902 ntBASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 SOCS5P3-201ENST00000425115 1576 ntBASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 AC063976.2-201ENST00000425667 3556 ntBASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 ANAPC1P1-201ENST00000426186 2145 ntBASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 NEAT1-202ENST00000501122 22743 ntBASIC5.92□□□□□ -1.46
CCDC39Q9UFE4 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 MIR369-201ENST00000362155 70 ntBASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 RNY4P34-201ENST00000364779 95 ntBASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 IL6-203ENST00000401651 539 ntTSL 2 BASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 RNU6-195P-201ENST00000411352 109 ntBASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 RPL35AP24-201ENST00000413846 330 ntBASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 RPL35AP12-201ENST00000425362 338 ntBASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 GAPDHP34-201ENST00000432112 823 ntBASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 RPL7P54-201ENST00000438336 674 ntBASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 AL590365.1-201ENST00000450788 243 ntBASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 AL133244.1-201ENST00000456007 258 ntBASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 CYCSP34-201ENST00000458172 304 ntBASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 Y_RNA.639-201ENST00000458981 102 ntBASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 MTCO2P29-201ENST00000465212 189 ntBASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 AL163540.1-201ENST00000485382 386 ntBASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 KCTD9P2-201ENST00000512203 1013 ntBASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 RNU6-1170P-201ENST00000515974 106 ntBASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 RNU6-941P-201ENST00000516346 108 ntBASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 RNU6-1308P-201ENST00000516817 103 ntBASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 RNA5SP373-201ENST00000517271 95 ntBASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 AC012400.1-201ENST00000518452 381 ntBASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 COX6CP5-201ENST00000527162 228 ntBASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 AC126177.5-201ENST00000549599 178 ntBASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 MIR3149-201ENST00000584629 83 ntBASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 AC016925.2-201ENST00000605108 242 ntBASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 AC005332.6-201ENST00000613178 446 ntBASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 PISRT1-201ENST00000626175 531 ntBASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 AC092747.4-201ENST00000620519 1861 ntBASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 GDI2P1-201ENST00000429312 1336 ntBASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 ANKRD62P1-201ENST00000434304 1623 ntBASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC39Q9UFE4 MAPK10-349ENST00000641767 3661 ntBASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC39Q9UFE4 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms