Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 GAPDHP58-201ENST00000438477 1006 ntBASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 AC013267.1-201ENST00000458227 267 ntBASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 RPS4XP10-201ENST00000465034 731 ntBASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 FCF1P3-201ENST00000496394 590 ntBASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 AC100784.1-201ENST00000522790 310 ntBASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 AP000907.2-201ENST00000530827 353 ntBASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 AL390726.5-202ENST00000564800 256 ntBASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 AC006116.3-201ENST00000592968 361 ntBASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 MIR98-201ENST00000606724 119 ntBASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 MLECP1-201ENST00000615893 709 ntBASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 WDR75-207ENST00000631047 270 ntTSL 5 BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 AC244258.1-201ENST00000637553 1071 ntBASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.13□□□□□ -1.59
TRIM39Q9HCM9 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 AC114947.2-201ENST00000565748 2125 ntBASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 AL672167.1-205ENST00000641112 3080 ntBASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 Y_RNA.453-201ENST00000384223 109 ntBASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 Y_RNA.573-201ENST00000384763 105 ntBASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 AC245052.5-201ENST00000416320 649 ntBASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 AC013429.2-201ENST00000418798 781 ntBASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 RPL31P35-201ENST00000431058 377 ntBASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 AC002486.1-201ENST00000435098 391 ntBASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 AC122718.1-201ENST00000439448 744 ntBASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 AC112653.1-201ENST00000443851 386 ntBASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 AC079448.1-201ENST00000449377 373 ntBASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 AC092647.2-201ENST00000452998 253 ntBASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 FAM133DP-201ENST00000464802 691 ntBASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 AC097484.1-201ENST00000471148 389 ntBASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 OR5H5P-201ENST00000503164 928 ntBASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 FAM92A1P1-201ENST00000528023 890 ntBASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 AC107918.3-201ENST00000533272 382 ntBASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 HMGN2P6-201ENST00000551091 273 ntBASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 MIR3691-201ENST00000578066 90 ntBASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 RN7SL290P-201ENST00000578661 300 ntBASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 MIR548S-201ENST00000581352 82 ntBASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 MIR3936-201ENST00000584304 110 ntBASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 AC068790.3-201ENST00000602988 553 ntBASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 AC211433.2-201ENST00000608433 387 ntBASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 MIR6719-201ENST00000622428 87 ntBASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 AC018445.2-201ENST00000622987 260 ntBASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 ZNF33CP-201ENST00000432492 2030 ntBASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
TRIM39Q9HCM9 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
TRIM39Q9HCM9 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 157 ms