Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC3.3□□□□□ -1.88
SKA3Q8IX90 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC3.3□□□□□ -1.88
SKA3Q8IX90 AC074029.1-201ENST00000552531 1044 ntBASIC3.3□□□□□ -1.88
SKA3Q8IX90 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC3.3□□□□□ -1.88
SKA3Q8IX90 AL121576.1-201ENST00000556055 276 ntBASIC3.3□□□□□ -1.88
SKA3Q8IX90 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC3.3□□□□□ -1.88
SKA3Q8IX90 AL020997.3-201ENST00000602843 359 ntBASIC3.3□□□□□ -1.88
SKA3Q8IX90 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC3.3□□□□□ -1.88
SKA3Q8IX90 AP002802.2-201ENST00000605877 235 ntBASIC3.3□□□□□ -1.88
SKA3Q8IX90 AP004247.3-201ENST00000608682 624 ntBASIC3.3□□□□□ -1.88
SKA3Q8IX90 VN1R74P-201ENST00000613259 503 ntBASIC3.3□□□□□ -1.88
SKA3Q8IX90 AC018816.2-201ENST00000621460 353 ntBASIC3.3□□□□□ -1.88
SKA3Q8IX90 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.3□□□□□ -1.88
SKA3Q8IX90 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SKA3Q8IX90 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
SKA3Q8IX90 AC092326.2-201ENST00000624772 1561 ntBASIC3.29□□□□□ -1.88
SKA3Q8IX90 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.29□□□□□ -1.88
SKA3Q8IX90 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
SKA3Q8IX90 AP004289.2-201ENST00000444413 1457 ntBASIC3.29□□□□□ -1.88
SKA3Q8IX90 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
SKA3Q8IX90 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
SKA3Q8IX90 SGO1P1-201ENST00000603525 1447 ntBASIC3.29□□□□□ -1.88
SKA3Q8IX90 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.29□□□□□ -1.88
SKA3Q8IX90 PWAR6-201ENST00000552334 4618 ntBASIC3.29□□□□□ -1.88
SKA3Q8IX90 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
SKA3Q8IX90 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
SKA3Q8IX90 OR4A15-201ENST00000314706 1035 ntBASIC3.29□□□□□ -1.88
SKA3Q8IX90 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
SKA3Q8IX90 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
SKA3Q8IX90 OR1L1-202ENST00000373686 1083 ntBASIC3.29□□□□□ -1.88
SKA3Q8IX90 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC3.29□□□□□ -1.88
SKA3Q8IX90 RNU6-444P-201ENST00000383988 108 ntBASIC3.29□□□□□ -1.88
SKA3Q8IX90 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
SKA3Q8IX90 SOD2P1-201ENST00000396543 562 ntBASIC3.29□□□□□ -1.88
SKA3Q8IX90 MTCO2P31-201ENST00000402702 684 ntBASIC3.29□□□□□ -1.88
SKA3Q8IX90 SFR1P1-201ENST00000403720 688 ntBASIC3.29□□□□□ -1.88
SKA3Q8IX90 RN7SKP156-201ENST00000410308 342 ntBASIC3.29□□□□□ -1.88
SKA3Q8IX90 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
SKA3Q8IX90 AC017079.2-201ENST00000416102 485 ntBASIC3.29□□□□□ -1.88
SKA3Q8IX90 RPS15AP40-201ENST00000419621 391 ntBASIC3.29□□□□□ -1.88
SKA3Q8IX90 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC3.29□□□□□ -1.88
SKA3Q8IX90 AL139247.1-201ENST00000422768 325 ntBASIC3.29□□□□□ -1.88
SKA3Q8IX90 HIGD1AP12-201ENST00000427832 281 ntBASIC3.29□□□□□ -1.88
SKA3Q8IX90 AL513175.1-201ENST00000431492 780 ntBASIC3.29□□□□□ -1.88
SKA3Q8IX90 MTCYBP15-201ENST00000433123 1127 ntBASIC3.29□□□□□ -1.88
SKA3Q8IX90 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC3.29□□□□□ -1.88
SKA3Q8IX90 AL138799.3-201ENST00000438968 350 ntBASIC3.29□□□□□ -1.88
SKA3Q8IX90 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC3.29□□□□□ -1.88
SKA3Q8IX90 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC3.29□□□□□ -1.88
SKA3Q8IX90 RPL21P133-201ENST00000443666 476 ntBASIC3.29□□□□□ -1.88
SKA3Q8IX90 SETD6P1-201ENST00000444575 317 ntBASIC3.29□□□□□ -1.88
SKA3Q8IX90 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC3.29□□□□□ -1.88
SKA3Q8IX90 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC3.29□□□□□ -1.88
SKA3Q8IX90 RPS29P31-201ENST00000446147 164 ntBASIC3.29□□□□□ -1.88
SKA3Q8IX90 AC006480.1-201ENST00000449887 378 ntBASIC3.29□□□□□ -1.88
SKA3Q8IX90 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.29□□□□□ -1.88
SKA3Q8IX90 AC244505.3-201ENST00000454598 187 ntBASIC3.29□□□□□ -1.88
SKA3Q8IX90 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC3.29□□□□□ -1.88
SKA3Q8IX90 RAD51AP1P1-201ENST00000484195 1001 ntBASIC3.29□□□□□ -1.88
SKA3Q8IX90 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC3.29□□□□□ -1.88
SKA3Q8IX90 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
SKA3Q8IX90 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
SKA3Q8IX90 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
SKA3Q8IX90 SUMO2P5-201ENST00000506790 245 ntBASIC3.29□□□□□ -1.88
SKA3Q8IX90 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
SKA3Q8IX90 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
SKA3Q8IX90 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.29□□□□□ -1.88
SKA3Q8IX90 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC3.29□□□□□ -1.88
SKA3Q8IX90 HIGD1AP10-201ENST00000527837 282 ntBASIC3.29□□□□□ -1.88
SKA3Q8IX90 MTND2P26-201ENST00000528255 1029 ntBASIC3.29□□□□□ -1.88
SKA3Q8IX90 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC3.29□□□□□ -1.88
SKA3Q8IX90 ZNF971P-201ENST00000562068 1249 ntBASIC3.29□□□□□ -1.88
SKA3Q8IX90 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.29□□□□□ -1.88
SKA3Q8IX90 AC087499.8-201ENST00000578406 226 ntBASIC3.29□□□□□ -1.88
SKA3Q8IX90 AP001542.2-201ENST00000593141 364 ntBASIC3.29□□□□□ -1.88
SKA3Q8IX90 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.29□□□□□ -1.88
SKA3Q8IX90 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC3.29□□□□□ -1.88
SKA3Q8IX90 AC093673.2-201ENST00000609674 331 ntBASIC3.29□□□□□ -1.88
SKA3Q8IX90 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
SKA3Q8IX90 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC3.29□□□□□ -1.88
SKA3Q8IX90 AF127577.6-201ENST00000623352 2191 ntBASIC3.29□□□□□ -1.88
SKA3Q8IX90 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.29□□□□□ -1.88
SKA3Q8IX90 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
SKA3Q8IX90 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.29□□□□□ -1.88
SKA3Q8IX90 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.29□□□□□ -1.88
SKA3Q8IX90 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
SKA3Q8IX90 AC006504.1-201ENST00000562493 3666 ntBASIC3.29□□□□□ -1.88
SKA3Q8IX90 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
SKA3Q8IX90 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
SKA3Q8IX90 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
SKA3Q8IX90 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
SKA3Q8IX90 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
SKA3Q8IX90 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
SKA3Q8IX90 MIR620-201ENST00000385232 95 ntBASIC3.28□□□□□ -1.88
SKA3Q8IX90 RNA5SP424-201ENST00000390988 115 ntBASIC3.28□□□□□ -1.88
SKA3Q8IX90 MTHFD2P2-201ENST00000407725 247 ntBASIC3.28□□□□□ -1.88
SKA3Q8IX90 AC007390.1-201ENST00000415722 356 ntBASIC3.28□□□□□ -1.88
SKA3Q8IX90 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
SKA3Q8IX90 RPL21P109-201ENST00000422213 475 ntBASIC3.28□□□□□ -1.88
SKA3Q8IX90 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms